Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
extracellular:
20408568
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES19356 | Sorghum | cytosol | 92.31 | 92.31 |
| TraesCS1D01G225400.1 | Wheat | cytosol | 82.81 | 82.43 |
| TraesCS1A01G223800.1 | Wheat | cytosol | 82.81 | 82.43 |
| TraesCS1B01G237100.1 | Wheat | cytosol | 82.35 | 81.98 |
| Os05t0350600-01 | Rice | cytosol, plasma membrane, plastid | 80.54 | 80.91 |
| HORVU1Hr1G059970.2 | Barley | cytosol | 76.02 | 76.71 |
| Zm00001d037993_P001 | Maize | cytosol | 91.4 | 73.19 |
| GSMUA_Achr9P04480_001 | Banana | cytosol | 67.42 | 67.42 |
| Zm00001d047727_P002 | Maize | cytosol | 66.06 | 64.6 |
| Zm00001d028755_P001 | Maize | cytosol | 65.61 | 64.44 |
| CDX86501 | Canola | cytosol | 11.76 | 60.47 |
| AT2G30060.1 | Thale cress | cytosol | 57.92 | 58.99 |
| CDY15604 | Canola | cytosol | 59.28 | 58.48 |
| VIT_04s0008g01410.t01 | Wine grape | cytosol | 57.92 | 58.18 |
| AT1G07140.1 | Thale cress | cytosol | 59.73 | 57.89 |
| CDX86496 | Canola | cytosol | 58.37 | 57.59 |
| CDY06679 | Canola | cytosol | 57.01 | 57.27 |
| Bra015554.1-P | Field mustard | cytosol | 57.01 | 57.27 |
| CDY24034 | Canola | cytosol | 55.66 | 57.21 |
| Bra030675.1-P | Field mustard | cytosol | 57.92 | 57.14 |
| CDY09935 | Canola | cytosol | 57.92 | 56.89 |
| CDY59068 | Canola | cytosol | 57.92 | 56.89 |
| PGSC0003DMT400021160 | Potato | cytosol | 57.47 | 56.7 |
| Solyc08g062660.2.1 | Tomato | nucleus, plastid | 57.47 | 56.7 |
| AT5G58590.1 | Thale cress | cytosol | 56.11 | 56.62 |
| KRH75945 | Soybean | cytosol | 58.37 | 56.33 |
| Bra031555.1-P | Field mustard | cytosol | 57.92 | 56.14 |
| CDX84862 | Canola | cytosol | 56.11 | 56.11 |
| Bra022775.1-P | Field mustard | cytosol | 55.66 | 55.66 |
| KRH35051 | Soybean | endoplasmic reticulum | 54.75 | 55.5 |
| KRH65697 | Soybean | cytosol | 49.77 | 55.28 |
| KRG91719 | Soybean | endoplasmic reticulum | 55.2 | 54.71 |
| CDX80354 | Canola | cytosol | 19.91 | 49.44 |
| CDY10250 | Canola | plastid | 50.23 | 45.12 |
Protein Annotations
| EntrezGene:100282282 | Gene3D:2.30.29.30 | MapMan:23.5.1.6 | ProteinID:AQK94200.1 | UniProt:B6T5R1 | EMBL:BT087425 |
| EMBL:EU960326 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0006810 | GO:GO:0008150 |
| GO:GO:0046907 | InterPro:IPR000156 | InterPro:IPR011993 | PFAM:PF00638 | InterPro:PH-like_dom_sf | PFscan:PS50196 |
| PANTHER:PTHR23138 | PANTHER:PTHR23138:SF105 | InterPro:Ran_bind_dom | SMART:SM00160 | SUPFAM:SSF50729 | UniParc:UPI000182BE72 |
| EnsemblPlantsGene:Zm00001d010504 | EnsemblPlants:Zm00001d010504_P001 | EnsemblPlants:Zm00001d010504_T001 | SEG:seg | : | : |
Description
Ran-binding protein 1 homolog a
Coordinates
chr8:+:118250736..118254293
Molecular Weight (calculated)
23776.7 Da
IEP (calculated)
4.513
GRAVY (calculated)
-0.681
Length
221 amino acids
Sequence
(BLAST)
(BLAST)
001: MADKEPVVER PEAGEEEEDA SAAAAAGEEE DTGAQVAPIV RLEEVAVTTG EEDEDVLLDM KAKLYRFDKD GNQWKERGTG AVKLLKHKQT GKVRLVMRQA
101: KTLKICANHL VASTTKMQEH AGSDKSCVWH AADFADGELK EEMFAIRFGS VENCKKFKEL VEEIAESLTK NEGKEGEDGG STAGLLAKLT VSEGKSEGSG
201: KSESTDSGKV TETKADTAPA E
101: KTLKICANHL VASTTKMQEH AGSDKSCVWH AADFADGELK EEMFAIRFGS VENCKKFKEL VEEIAESLTK NEGKEGEDGG STAGLLAKLT VSEGKSEGSG
201: KSESTDSGKV TETKADTAPA E
001: MASTEPEREN REDETEVNED EDTGAQVAPI VRLEEVAVTT GEEDEDAVLD LKSKMYRFDK EGNQWKERGA GTVKLLKHKE TGKVRLVMRQ SKTLKICANH
101: LISSGMSVQE HSGNEKSCLW HATDFSDGEL KDELFCIRFA SIENCKTFME KFTEIAESQQ VGKESTQGDE AAGLIENLSV EENISEEKAK EAEEKEPAKE
201: DKETKKEKVE EEKKTEAST
101: LISSGMSVQE HSGNEKSCLW HATDFSDGEL KDELFCIRFA SIENCKTFME KFTEIAESQQ VGKESTQGDE AAGLIENLSV EENISEEKAK EAEEKEPAKE
201: DKETKKEKVE EEKKTEAST
Arabidopsis Description
RANBP1CAt5g58590 [Source:UniProtKB/TrEMBL;Acc:Q1WWI2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.