Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d039091_P002 | Maize | cytosol | 93.28 | 100.0 |
| Zm00001d011474_P001 | Maize | cytosol, plastid | 85.38 | 97.74 |
| Zm00001d044054_P002 | Maize | cytosol | 84.98 | 97.29 |
| Bra035562.1-P | Field mustard | cytosol, nucleus, plastid | 81.82 | 93.67 |
| VIT_04s0008g05020.t01 | Wine grape | cytosol | 81.82 | 93.67 |
| AT5G55190.1 | Thale cress | cytosol | 81.42 | 93.21 |
| VIT_09s0002g05940.t01 | Wine grape | cytosol | 81.42 | 93.21 |
| KRH52484 | Soybean | cytosol | 81.03 | 92.76 |
| KRH61811 | Soybean | cytosol | 81.03 | 92.76 |
| KRH61808 | Soybean | nucleus | 81.03 | 92.76 |
| KRH52485 | Soybean | cytosol | 81.03 | 92.76 |
| KRH52483 | Soybean | nucleus | 81.03 | 92.76 |
| Bra002926.1-P | Field mustard | cytosol, nucleus, plastid | 81.03 | 92.76 |
| KXG22580 | Sorghum | cytosol, nucleus | 34.78 | 92.63 |
| AT5G20020.1 | Thale cress | cytosol | 80.63 | 92.31 |
| AT5G20010.1 | Thale cress | cytosol | 80.24 | 91.86 |
| CDY19907 | Canola | cytosol | 81.03 | 91.52 |
| Solyc05g023800.2.1 | Tomato | nucleus | 79.05 | 90.5 |
| Solyc01g104700.2.1 | Tomato | cytosol, nucleus | 79.05 | 90.5 |
| Solyc01g104680.2.1 | Tomato | cytosol | 79.05 | 90.5 |
| PGSC0003DMT400016576 | Potato | cytosol | 79.05 | 90.5 |
| PGSC0003DMT400076528 | Potato | cytosol | 78.66 | 90.05 |
| Zm00001d011328_P001 | Maize | cytosol | 45.45 | 88.46 |
| KRH56644 | Soybean | cytosol | 76.28 | 87.33 |
| CDX70904 | Canola | extracellular | 79.84 | 85.23 |
| TraesCS7B01G254000.2 | Wheat | cytosol | 75.1 | 85.2 |
| GSMUA_Achr5P09850_001 | Banana | plasma membrane | 81.42 | 83.74 |
| CDY06600 | Canola | cytosol | 81.82 | 83.47 |
| CDY20779 | Canola | vacuole | 81.42 | 81.1 |
| GSMUA_Achr1P11790_001 | Banana | cytosol, golgi | 81.42 | 79.84 |
| GSMUA_Achr6P01500_001 | Banana | vacuole | 79.45 | 79.76 |
| VIT_11s0016g04780.t01 | Wine grape | plastid | 81.82 | 79.62 |
| CDY17309 | Canola | plastid | 81.42 | 79.54 |
| GSMUA_Achr4P00780_001 | Banana | mitochondrion | 81.42 | 78.03 |
| HORVU1Hr1G090760.2 | Barley | plastid | 77.08 | 76.77 |
| GSMUA_Achr5P06130_001 | Banana | cytosol | 77.87 | 75.19 |
| GSMUA_Achr1P05300_001 | Banana | mitochondrion | 81.03 | 73.48 |
| GSMUA_Achr1P14580_001 | Banana | cytosol | 80.63 | 71.83 |
| KRH61809 | Soybean | nucleus | 81.03 | 70.69 |
| PGSC0003DMT400078306 | Potato | cytosol | 62.06 | 68.26 |
| VIT_04s0008g05030.t01 | Wine grape | cytosol | 81.42 | 67.54 |
| VIT_18s0001g11670.t01 | Wine grape | endoplasmic reticulum, extracellular | 43.48 | 67.48 |
| GSMUA_AchrUn_... | Banana | cytosol | 60.08 | 67.26 |
| AT5G55080.1 | Thale cress | cytosol | 54.94 | 62.61 |
| CDY61737 | Canola | cytosol, mitochondrion, nucleus | 15.41 | 58.21 |
| Solyc06g082720.1.1 | Tomato | golgi | 40.32 | 50.25 |
| GSMUA_Achr6P01550_001 | Banana | nucleus | 81.03 | 43.07 |
Protein Annotations
| EntrezGene:100193260 | EntrezGene:103630761 | MapMan:23.5.1.4 | UniProt:A0A1D6MDI4 | ProteinID:AQK88712.1 | GO:GO:0000166 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003924 | GO:GO:0005488 | GO:GO:0005525 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006810 | GO:GO:0006913 | GO:GO:0008150 |
| GO:GO:0015031 | GO:GO:0016787 | InterPro:IPR002041 | InterPro:P-loop_NTPase | PFAM:PF00071 | PRINTS:PR00627 |
| PFscan:PS51418 | PANTHER:PTHR24071 | PANTHER:PTHR24071:SF8 | InterPro:Ran_GTPase | SMART:SM00173 | SMART:SM00174 |
| SMART:SM00175 | SMART:SM00176 | SUPFAM:SSF52540 | InterPro:Small_GTP-bd_dom | InterPro:Small_GTPase | TIGRFAMs:TIGR00231 |
| UniParc:UPI0008425353 | EnsemblPlantsGene:Zm00001d039090 | EnsemblPlants:Zm00001d039090_P001 | EnsemblPlants:Zm00001d039090_T001 | SEG:seg | : |
Description
GTP-binding nuclear protein Ran-2
Coordinates
chr6:-:169788530..169791254
Molecular Weight (calculated)
28688.4 Da
IEP (calculated)
7.705
GRAVY (calculated)
-0.352
Length
253 amino acids
Sequence
(BLAST)
(BLAST)
001: MALPNQGTVD YPSFKLVIVG DGGTGEFPNG SVSPLVVRNG RSCRCFYEIW QIGLGRCKTT FVKRHLTGEF EKKYEPTIGV EVHPLDFTTN CGKIRFYCWD
101: TAGQEKFGGL RDGYYIHGQC AIIMFDVTSR LTYKNVPTWH RDLCRVCENI PIVLCGNKVD VKNRQVKAKQ VTFHRKKNLQ YYEISAKSNY NFEKPFLYLA
201: RKLAGDPNLH FVEAVALKPP EVTIDMAMQQ QHEAELAAAA AQPLPDDDDD LIE
101: TAGQEKFGGL RDGYYIHGQC AIIMFDVTSR LTYKNVPTWH RDLCRVCENI PIVLCGNKVD VKNRQVKAKQ VTFHRKKNLQ YYEISAKSNY NFEKPFLYLA
201: RKLAGDPNLH FVEAVALKPP EVTIDMAMQQ QHEAELAAAA AQPLPDDDDD LIE
001: MALPNQQTVD YPSFKLVIVG DGGTGKTTFV KRHLTGEFEK KYEPTIGVEV HPLDFFTNCG KIRFYCWDTA GQEKFGGLRD GYYIHGQCAI IMFDVTARLT
101: YKNVPTWHRD LCRVCENIPI VLCGNKVDVK NRQVKAKQVT FHRKKNLQYY EISAKSNYNF EKPFLYLARK LAGDQNLHFV ETPALAPPEV HIDIADQQKN
201: EAELLQAAAQ PLPDDDDDIF E
101: YKNVPTWHRD LCRVCENIPI VLCGNKVDVK NRQVKAKQVT FHRKKNLQYY EISAKSNYNF EKPFLYLARK LAGDQNLHFV ETPALAPPEV HIDIADQQKN
201: EAELLQAAAQ PLPDDDDDIF E
Arabidopsis Description
RAN1GTP-binding nuclear protein [Source:UniProtKB/TrEMBL;Acc:A0A178UC18]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.