Factsheet for PGSC0003DMT400078306

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g082720.1.1	Tomato	golgi	66.52	75.37
PGSC0003DMT400076528	Potato	cytosol	69.13	71.95
PGSC0003DMT400016576	Potato	cytosol	69.13	71.95
Zm00001d044054_P002	Maize	cytosol	68.7	71.49
Zm00001d011474_P001	Maize	cytosol, plastid	68.7	71.49
Os01t0611100-01	Rice	plastid	68.7	71.49
KXG32999	Sorghum	cytosol	68.7	71.49
EES01060	Sorghum	cytosol	66.09	69.09
KRH56644	Soybean	cytosol	65.22	67.87
Zm00001d039091_P002	Maize	cytosol	68.26	66.53
TraesCS7B01G254000.2	Wheat	cytosol	63.48	65.47
Zm00001d039090_P001	Maize	cytosol	68.26	62.06
GSMUA_Achr5P06130_001	Banana	cytosol	69.57	61.07
Zm00001d011328_P001	Maize	cytosol	34.35	60.77
KXG22580	Sorghum	cytosol, nucleus	23.48	56.84
AT5G55080.1	Thale cress	cytosol	51.74	53.6
TraesCS7D01G155200.2	Wheat	plastid	21.3	24.87

Protein Annotations

EntrezGene:102581096	MapMan:23.5.1.4	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006810	GO:GO:0006913	GO:GO:0008150	GO:GO:0015031	GO:GO:0016787
InterPro:IPR002041	UniProt:M1CZU9	InterPro:P-loop_NTPase	PFAM:PF00071	EnsemblPlantsGene:PGSC0003DMG400030479	PGSC:PGSC0003DMG400030479
EnsemblPlants:PGSC0003DMT400078306	PRINTS:PR00627	PFscan:PS51418	PANTHER:PTHR24071	PANTHER:PTHR24071:SF7	InterPro:Ran_GTPase
SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom
InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI000295F42C	RefSeq:XP_006350898.1	SEG:seg	:

Description

GTP-binding nuclear protein Ran-1 [Source:PGSC_GENE;Acc:PGSC0003DMG400030479]

Coordinates

chr6:-:57730676..57731368

Molecular Weight (calculated)

26938.1 Da

IEP (calculated)

5.170

GRAVY (calculated)

-0.399

Length

230 amino acids

Sequence
(BLAST)

001: MDLSNQQIVD CPSFKLVILG DGGTGKTTFL KRHLNGEFDR KYEPTISVEV HPLDFFTNYG KIRFNCWDTV GQENFGGVRD NYYIHGQCAI IMFDFTVRLS
101: YMNVPTWHRD LFRFCENVPF VLCGNKIDIK HKQVKAKEIN FYRRKKNWPY YEISAKSNYN LELPFLFLAR KLVGDDNLHF VESPALAPPE VIFDLDTEKW
201: REIEFLNCIG KLPLPDEDDD LADDLRGFDE

Best Arabidopsis Sequence Match ( AT5G55190.1 )
(BLAST)

001: MALPNQQTVD YPSFKLVIVG DGGTGKTTFV KRHLTGEFEK KYEPTIGVEV HPLDFFTNCG KIRFYCWDTA GQEKFGGLRD GYYIHGQCAI IMFDVTARLT
101: YKNVPTWHRD LCRVCENIPI VLCGNKVDVK NRQVKAKQVT FHRKKNLQYY EISAKSNYNF EKPFLYLARK LAGDANLHFV ESPALAPPEV QIDLAAQQQH
201: EAELAAAASQ PLPDDDDDTF E

Arabidopsis Description

RAN3GTP-binding nuclear protein [Source:UniProtKB/TrEMBL;Acc:A0A178UD71]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.