CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

nucleus: 21132161
endoplasmic reticulum: 28499913
mitochondrion: 28499913
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG91719
KRH35051

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G55190.1	KRG91719	AT1G07140.1	9025305
AT5G55190.1	KRH35051	AT1G07140.1	9025305
AT5G55190.1	KRG91719	AT2G30060.1	9025305
AT5G55190.1	KRH35051	AT2G30060.1	9025305

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH52483	Soybean	nucleus	99.55	99.55
AT5G55190.1	Thale cress	cytosol	98.64	98.64
KRH61811	Soybean	cytosol	98.64	98.64
KRH52484	Soybean	cytosol	98.64	98.64
KRH52485	Soybean	cytosol	98.19	98.19
Bra035562.1-P	Field mustard	cytosol, nucleus, plastid	97.74	97.74
Bra002926.1-P	Field mustard	cytosol, nucleus, plastid	96.83	96.83
Solyc01g104680.2.1	Tomato	cytosol	95.93	95.93
Solyc01g104700.2.1	Tomato	cytosol, nucleus	95.93	95.93
CDY19907	Canola	cytosol	96.83	95.54
Solyc05g023800.2.1	Tomato	nucleus	95.48	95.48
PGSC0003DMT400076528	Potato	cytosol	95.48	95.48
PGSC0003DMT400016576	Potato	cytosol	95.48	95.48
Os01t0611100-01	Rice	plastid	95.48	95.48
HORVU0Hr1G030130.1	Barley	cytosol	93.21	94.93
Zm00001d044054_P002	Maize	cytosol	93.21	93.21
Zm00001d011474_P001	Maize	cytosol, plastid	93.21	93.21
KXG32999	Sorghum	cytosol	93.21	93.21
EES01060	Sorghum	cytosol	92.31	92.73
Zm00001d011328_P001	Maize	cytosol	51.58	87.69
KRH56644	Soybean	cytosol	87.33	87.33
CDY06600	Canola	cytosol	97.74	87.1
Zm00001d039091_P002	Maize	cytosol	92.76	86.86
CDY20779	Canola	vacuole	97.29	84.65
TraesCS7B01G254000.2	Wheat	cytosol	84.16	83.41
CDY17309	Canola	plastid	97.29	83.01
KXG22580	Sorghum	cytosol, nucleus	34.84	81.05
Zm00001d039090_P001	Maize	cytosol	92.76	81.03
KRH61809	Soybean	nucleus	98.64	75.17
VIT_18s0001g11670.t01	Wine grape	endoplasmic reticulum, extracellular	50.68	68.71
GSMUA_AchrUn_...	Banana	cytosol	70.14	68.58
TraesCS7D01G155200.2	Wheat	plastid	25.79	28.93

Protein Annotations

EntrezGene:100813067	MapMan:23.5.1.4	Gene3D:3.40.50.300	UniProt:A0A0R4J320	EMBL:ACUP02002190	EnsemblPlantsGene:GLYMA_04G069100
GO:GO:0000054	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488
GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0006606	GO:GO:0006810	GO:GO:0006913	GO:GO:0008150	GO:GO:0015031	GO:GO:0016787
InterPro:IPR002041	EnsemblPlants:KRH61808	ProteinID:KRH61808	ProteinID:KRH61808.1	InterPro:P-loop_NTPase	PFAM:PF00071
PRINTS:PR00627	PFscan:PS51418	PANTHER:PTHR24071	PANTHER:PTHR24071:SF7	InterPro:Ran_GTPase	SMART:SM00173
SMART:SM00174	SMART:SM00175	SMART:SM00176	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase
TIGRFAMs:TIGR00231	UniParc:UPI00019AA8E8	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:5767005..5770198

Molecular Weight (calculated)

25180.0 Da

IEP (calculated)

6.862

GRAVY (calculated)

-0.433

Length

221 amino acids

Sequence
(BLAST)

001: MALPNQQTVD YPSFKLVIVG DGGTGKTTFV KRHLTGEFEK KYEPTIGVEV HPLDFFTNCG KIRFYCWDTA GQEKFGGLRD GYYIHGQCAI IMFDVTARLT
101: YKNVPTWHRD LCRVCENIPI VLCGNKVDVK NRQVKAKQVT FHRKKNLQYY EISAKSNYNF EKPFLYLARK LAGDTNLHFV ESPALAPPEV QIDLAAQQQH
201: EAELLAAASQ PLPDDDDDQF E

Best Arabidopsis Sequence Match ( AT5G55190.1 )
(BLAST)

001: MALPNQQTVD YPSFKLVIVG DGGTGKTTFV KRHLTGEFEK KYEPTIGVEV HPLDFFTNCG KIRFYCWDTA GQEKFGGLRD GYYIHGQCAI IMFDVTARLT
101: YKNVPTWHRD LCRVCENIPI VLCGNKVDVK NRQVKAKQVT FHRKKNLQYY EISAKSNYNF EKPFLYLARK LAGDANLHFV ESPALAPPEV QIDLAAQQQH
201: EAELAAAASQ PLPDDDDDTF E

Arabidopsis Description

RAN3GTP-binding nuclear protein [Source:UniProtKB/TrEMBL;Acc:A0A178UD71]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.