Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_06s0004g06880.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G55190.1 | VIT_06s0004g06880.t01 | AT1G07140.1 | 9025305 |
| AT5G55190.1 | VIT_06s0004g06880.t01 | AT2G30060.1 | 9025305 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_04s0008g05020.t01 | Wine grape | cytosol | 85.0 | 100.0 |
| AT5G55190.1 | Thale cress | cytosol | 83.85 | 98.64 |
| Bra035562.1-P | Field mustard | cytosol, nucleus, plastid | 83.46 | 98.19 |
| Bra002926.1-P | Field mustard | cytosol, nucleus, plastid | 82.69 | 97.29 |
| VIT_09s0002g05940.t01 | Wine grape | cytosol | 82.69 | 97.29 |
| Solyc05g023800.2.1 | Tomato | nucleus | 81.92 | 96.38 |
| PGSC0003DMT400016576 | Potato | cytosol | 81.92 | 96.38 |
| CDY19907 | Canola | cytosol | 82.69 | 95.98 |
| Solyc01g104700.2.1 | Tomato | cytosol, nucleus | 81.54 | 95.93 |
| Solyc01g104680.2.1 | Tomato | cytosol | 81.54 | 95.93 |
| Os01t0611100-01 | Rice | plastid | 81.54 | 95.93 |
| PGSC0003DMT400076528 | Potato | cytosol | 81.15 | 95.48 |
| HORVU0Hr1G030130.1 | Barley | cytosol | 79.23 | 94.93 |
| Zm00001d044054_P002 | Maize | cytosol | 79.23 | 93.21 |
| Zm00001d011474_P001 | Maize | cytosol, plastid | 79.23 | 93.21 |
| KXG32999 | Sorghum | cytosol | 79.23 | 93.21 |
| EES01060 | Sorghum | cytosol | 78.85 | 93.18 |
| Zm00001d011328_P001 | Maize | cytosol | 44.23 | 88.46 |
| CDY06600 | Canola | cytosol | 83.85 | 87.9 |
| Zm00001d039091_P002 | Maize | cytosol | 79.62 | 87.71 |
| CDY20779 | Canola | vacuole | 83.85 | 85.83 |
| CDY17309 | Canola | plastid | 84.62 | 84.94 |
| TraesCS7B01G254000.2 | Wheat | cytosol | 71.92 | 83.86 |
| KXG22580 | Sorghum | cytosol, nucleus | 30.38 | 83.16 |
| Zm00001d039090_P001 | Maize | cytosol | 79.62 | 81.82 |
| VIT_04s0008g05030.t01 | Wine grape | cytosol | 83.85 | 71.48 |
| GSMUA_AchrUn_... | Banana | cytosol | 61.15 | 70.35 |
| VIT_18s0001g11670.t01 | Wine grape | endoplasmic reticulum, extracellular | 43.46 | 69.33 |
| TraesCS7D01G155200.2 | Wheat | plastid | 24.23 | 31.98 |
Protein Annotations
| EntrezGene:100247365 | wikigene:100247365 | EntrezGene:100250818 | wikigene:100250818 | MapMan:23.5.1.4 | Gene3D:3.40.50.300 |
| ProteinID:CBI28152 | ProteinID:CBI28152.3 | ProteinID:CCB46775 | ProteinID:CCB46775.1 | UniProt:D7TBW7 | EMBL:FN595231 |
| EMBL:FN595756 | GO:GO:0000054 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003924 |
| GO:GO:0005488 | GO:GO:0005525 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005737 | GO:GO:0006606 | GO:GO:0006810 | GO:GO:0006913 | GO:GO:0008150 | GO:GO:0015031 |
| GO:GO:0016787 | InterPro:IPR002041 | EntrezGene:LOC100247365 | wikigene:LOC100247365 | EntrezGene:LOC100250818 | wikigene:LOC100250818 |
| InterPro:P-loop_NTPase | PFAM:PF00071 | PRINTS:PR00627 | PFscan:PS51418 | PANTHER:PTHR24071 | PANTHER:PTHR24071:SF7 |
| InterPro:Ran_GTPase | SMART:SM00173 | SMART:SM00174 | SMART:SM00175 | SMART:SM00176 | SUPFAM:SSF52540 |
| InterPro:Small_GTP-bd_dom | InterPro:Small_GTPase | TIGR:TC53306 | TIGRFAMs:TIGR00231 | UniParc:UPI00015C8A50 | ArrayExpress:VIT_11s0016g04780 |
| EnsemblPlantsGene:VIT_11s0016g04780 | EnsemblPlants:VIT_11s0016g04780.t01 | unigene:Vvi.1314 | RefSeq:XP_002285018 | RefSeq:XP_002285018.1 | RefSeq:XP_002285018.2 |
| SEG:seg | : | : | : | : | : |
Description
GTP-binding nuclear protein [Source:UniProtKB/TrEMBL;Acc:D7TBW7]
Coordinates
chr11:+:4088564..4093081
Molecular Weight (calculated)
29277.8 Da
IEP (calculated)
6.980
GRAVY (calculated)
-0.374
Length
260 amino acids
Sequence
(BLAST)
(BLAST)
001: MVPHPINTLA LASSSLSRAL SLSGPPSLRC STEDCYDRYM ALPNQQTVDY PSFKLVIVGD GGTGKTTFVK RHLTGEFEKK YEPTIGVEVH PLDFFTNCGK
101: IRFYCWDTAG QEKFGGLRDG YYIHGQCAII MFDVTARLTY KNVPTWHRDL CRVCENIPIV LCGNKVDVKN RQVKAKQVTF HRKKNLQYYE ISAKSNYNFE
201: KPFLYLARKL AGDPNLHFVE SPALAPPEVH IDLAAQQQHE AELAAAASQP LPDDDDDAFE
101: IRFYCWDTAG QEKFGGLRDG YYIHGQCAII MFDVTARLTY KNVPTWHRDL CRVCENIPIV LCGNKVDVKN RQVKAKQVTF HRKKNLQYYE ISAKSNYNFE
201: KPFLYLARKL AGDPNLHFVE SPALAPPEVH IDLAAQQQHE AELAAAASQP LPDDDDDAFE
001: MALPNQQTVD YPSFKLVIVG DGGTGKTTFV KRHLTGEFEK KYEPTIGVEV HPLDFFTNCG KIRFYCWDTA GQEKFGGLRD GYYIHGQCAI IMFDVTARLT
101: YKNVPTWHRD LCRVCENIPI VLCGNKVDVK NRQVKAKQVT FHRKKNLQYY EISAKSNYNF EKPFLYLARK LAGDANLHFV ESPALAPPEV QIDLAAQQQH
201: EAELAAAASQ PLPDDDDDTF E
101: YKNVPTWHRD LCRVCENIPI VLCGNKVDVK NRQVKAKQVT FHRKKNLQYY EISAKSNYNF EKPFLYLARK LAGDANLHFV ESPALAPPEV QIDLAAQQQH
201: EAELAAAASQ PLPDDDDDTF E
Arabidopsis Description
RAN3GTP-binding nuclear protein [Source:UniProtKB/TrEMBL;Acc:A0A178UD71]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.