Factsheet for HORVU4Hr1G056140.3

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
cytosol 3
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU0Hr1G030130.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G07140.1	HORVU0Hr1G030130.1	AT5G55190.1	21798944
AT1G07140.1	HORVU0Hr1G030130.1	AT5G55190.1	9025305
AT2G30060.1	HORVU0Hr1G030130.1	AT5G55190.1	9025305

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G110400.1	Wheat	cytosol	73.19	97.58
TraesCS4B01G193600.1	Wheat	cytosol	72.46	96.62
TraesCS4D01G194600.1	Wheat	cytosol	71.01	95.15
Os03t0292800-01	Rice	plastid	60.51	79.9
EER92413	Sorghum	cytosol	60.14	79.43
HORVU1Hr1G059970.2	Barley	cytosol	56.88	71.69
Zm00001d047727_P002	Maize	cytosol	57.61	70.35
Zm00001d028755_P001	Maize	cytosol	56.88	69.78
GSMUA_Achr11P...	Banana	cytosol	51.09	68.12
GSMUA_Achr7P22420_001	Banana	cytosol	49.64	66.83
GSMUA_Achr11P...	Banana	cytosol	50.72	65.73
GSMUA_Achr10P...	Banana	cytosol	49.64	64.93
KRH35051	Soybean	endoplasmic reticulum	46.74	59.17
VIT_04s0008g01410.t01	Wine grape	cytosol	46.74	58.64
CDX86501	Canola	cytosol	9.06	58.14
KRG91719	Soybean	endoplasmic reticulum	46.74	57.85
CDY24034	Canola	cytosol	44.93	57.67
AT2G30060.1	Thale cress	cytosol	45.29	57.6
CDX84862	Canola	cytosol	46.01	57.47
Bra022775.1-P	Field mustard	cytosol	45.65	57.01
PGSC0003DMT400021160	Potato	cytosol	46.01	56.7
Solyc08g062660.2.1	Tomato	nucleus, plastid	45.65	56.25
CDY06679	Canola	cytosol	44.2	55.45
Bra015554.1-P	Field mustard	cytosol	44.2	55.45
KRH65697	Soybean	cytosol	39.86	55.28
AT5G58590.1	Thale cress	cytosol	43.48	54.79
CDY59068	Canola	cytosol	44.57	54.67
CDX86496	Canola	cytosol	44.2	54.46
CDY15604	Canola	cytosol	44.2	54.46
CDY09935	Canola	cytosol	44.2	54.22
Bra030675.1-P	Field mustard	cytosol	43.84	54.02
Bra031555.1-P	Field mustard	cytosol	44.57	53.95
AT1G07140.1	Thale cress	cytosol	44.2	53.51
KRH75945	Soybean	cytosol	43.84	52.84
CDX80354	Canola	cytosol	15.58	48.31
CDY10250	Canola	plastid	38.04	42.68

Protein Annotations

Gene3D:2.30.29.30	MapMan:23.5.1.6	ncoils:Coil	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0006810	GO:GO:0008150	GO:GO:0046907	EnsemblPlantsGene:HORVU4Hr1G056140	EnsemblPlants:HORVU4Hr1G056140.3	InterPro:IPR000156
InterPro:IPR011993	UniProt:M0XSD4	PFAM:PF00638	InterPro:PH-like_dom_sf	PFscan:PS50196	PANTHER:PTHR23138
PANTHER:PTHR23138:SF105	InterPro:Ran_bind_dom	SMART:SM00160	SUPFAM:SSF50729	UniParc:UPI000296B92F	SEG:seg

Description

No Description!

Coordinates

chrchr4H:-:471124913..471128131

Molecular Weight (calculated)

30382.8 Da

IEP (calculated)

4.639

GRAVY (calculated)

-0.614

Length

276 amino acids

Sequence
(BLAST)

001: MLSPETRLKT LPGVLLSPIR PLSSAHGPAP CCFYNPPARV SLSSPPRRPQ QVATTLVEQA SAAPSPTPAM ADPAEHREEE EEAAAAGEEE DTGAQIAPIV
101: KLEEVAITTG EEDEDVLLDM KAKLYRFDKD GGQWKERGTG TVKLLKHKES SKVRLVMRQA KTLKICANHL VVATTKMQEH AGSDKSCVWH ALDFADCELK
201: EEMFAIRFGS VENCKKFKDL VDEIAEQQGK NEEKESEEVS SAAELVEKLS VTEVKKEEQT EKVETPAVDD KKDAED

Best Arabidopsis Sequence Match ( AT5G58590.1 )
(BLAST)

001: MASTEPEREN REDETEVNED EDTGAQVAPI VRLEEVAVTT GEEDEDAVLD LKSKMYRFDK EGNQWKERGA GTVKLLKHKE TGKVRLVMRQ SKTLKICANH
101: LISSGMSVQE HSGNEKSCLW HATDFSDGEL KDELFCIRFA SIENCKTFME KFTEIAESQQ VGKESTQGDE AAGLIENLSV EENISEEKAK EAEEKEPAKE
201: DKETKKEKVE EEKKTEAST

Arabidopsis Description

RANBP1CAt5g58590 [Source:UniProtKB/TrEMBL;Acc:Q1WWI2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.