Factsheet for VIT_08s0007g05710.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
mitochondrion 5
vacuole 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_00s0332g00160.t01
VIT_00s0396g00020.t01
VIT_00s1311g00010.t01
VIT_01s0010g00360.t01
VIT_01s0010g03830.t01
VIT_01s0137g00010.t01
VIT_03s0063g02550.t01
VIT_04s0008g00830.t01
VIT_05s0077g02340.t01
VIT_07s0005g04440.t01
VIT_07s0141g00240.t01
VIT_07s0151g00140.t01
VIT_07s0151g00490.t01
VIT_08s0007g07900.t01
VIT_11s0103g00270.t01
VIT_12s0055g00700.t01
VIT_12s0121g00370.t01
VIT_13s0084g00610.t01
VIT_16s0039g02180.t01
VIT_16s0050g01490.t01
VIT_17s0000g01240.t01
VIT_19s0027g00780.t01
VIT_19s0090g01760.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G47930.1	VIT_03s0063g02550.t01	AT1G79010.1	12837548
AT3G47930.1	VIT_01s0137g00010.t01	AT2G02050.1	12837548
AT3G47930.1	VIT_07s0005g04440.t01	AT2G20360.1	12837548
AT3G47930.1	VIT_12s0055g00700.t01	AT2G31490.1	12837548
AT3G47930.1	VIT_08s0007g07900.t01	AT2G42310.1	12837548
AT3G47930.1	VIT_05s0077g02340.t01	AT2G47690.1	12837548
AT3G47930.1	VIT_16s0039g02180.t01	AT3G03100.1	12837548
AT3G47930.1	VIT_11s0103g00270.t01	AT3G08610.1	12837548
AT3G47930.1	VIT_13s0084g00610.t01	AT3G12260.1	12837548
AT3G47930.1	VIT_17s0000g01240.t01	AT3G48680.1	12837548
AT3G47930.1	VIT_08s0007g07900.t01	AT3G57785.1	12837548
AT3G47930.1	VIT_07s0141g00240.t01	AT4G02580.1	12837548
AT3G47930.1	VIT_19s0090g01760.t01	AT4G16450.1	12837548
AT3G47930.1	VIT_01s0010g00360.t01	AT4G20150.1	12837548
AT3G47930.1	VIT_01s0010g03830.t01	AT4G20150.1	12837548
AT3G47930.1	VIT_12s0121g00370.t01	AT5G08530.1	12837548
AT3G47930.1	VIT_19s0027g00780.t01	AT5G08530.1	12837548
AT3G47930.1	VIT_04s0008g00830.t01	AT5G11770.1	12837548
AT3G47930.1	VIT_16s0050g01490.t01	AT5G52840.1	12837548
AT3G47930.1	VIT_00s1311g00010.t01	AT5G67590.1	12837548
AT3G47930.1	VIT_07s0151g00140.t01	AT5G67590.1	12837548
AT3G47930.1	VIT_07s0151g00490.t01	AT5G67590.1	12837548
AT3G47930.1	VIT_00s0332g00160.t01	ATMG00510.1	12837548
AT3G47930.1	VIT_00s0396g00020.t01	ATMG01275.1	12837548

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH71746	Soybean	mitochondrion	76.85	80.14
Solyc10g079470.2.1	Tomato	nucleus	77.18	79.93
PGSC0003DMT400020997	Potato	mitochondrion	76.85	79.46
Bra018100.1-P	Field mustard	mitochondrion	75.7	76.71
CDY36916	Canola	mitochondrion	75.7	76.71
CDY24145	Canola	mitochondrion	75.37	76.5
AT3G47930.1	Thale cress	mitochondrion	76.35	76.23
KRH33172	Soybean	mitochondrion	69.79	72.9
TraesCS5B01G132600.1	Wheat	plastid	69.62	72.6
TraesCS5D01G140400.2	Wheat	mitochondrion	69.46	72.43
Os11t0143500-01	Rice	mitochondrion	69.13	72.21
KXG27706	Sorghum	mitochondrion	69.29	72.14
HORVU5Hr1G043060.2	Barley	mitochondrion	69.13	72.09
Os12t0139600-01	Rice	mitochondrion	68.8	71.87
TraesCS5A01G132300.2	Wheat	mitochondrion	69.13	68.34
GSMUA_Achr6P21390_001	Banana	cytosol	46.47	64.46
Zm00001d004956_P001	Maize	mitochondrion	69.79	47.01

Protein Annotations

KEGG:00053+1.3.2.3	MapMan:10.3.1.8	EntrezGene:100233005	wikigene:100233005	Gene3D:3.30.43.10	Gene3D:3.30.465.10
ProteinID:ABI26714	ProteinID:ABI26714.1	ProteinID:ACN59217	ProteinID:ACN59217.1	InterPro:ALO	EMBL:AM443025
ProteinID:CAN78536	ProteinID:CAN78536.1	ProteinID:CCB55301	ProteinID:CCB55301.1	EMBL:DQ843601	UniProt:F6HLP5
InterPro:FAD-bd_2	InterPro:FAD-bd_2-like_sf	InterPro:FAD-bd_2_sub1	InterPro:FAD_lactone_oxidase	EMBL:FJ772444	EMBL:FN595991
InterPro:GL_DH	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003885	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0008150
GO:GO:0008152	GO:GO:0009536	GO:GO:0016020	GO:GO:0016491	GO:GO:0016614	GO:GO:0016633
GO:GO:0016899	GO:GO:0050660	GO:GO:0055114	GO:GO:0071949	GO:GO:0080049	InterPro:IPR016166
InterPro:IPR016167	EntrezGene:LOC100233005	wikigene:LOC100233005	InterPro:Oxid_FAD_bind_N	PFAM:PF01565	PFAM:PF04030
PIRSF:PIRSF000136	PFscan:PS51387	PANTHER:PTHR43762	PANTHER:PTHR43762:SF1	SUPFAM:SSF56176	TIGR:TC68367
TIGRFAMs:TIGR01676	UniParc:UPI0002108E02	ArrayExpress:VIT_08s0007g05710	EnsemblPlantsGene:VIT_08s0007g05710	EnsemblPlants:VIT_08s0007g05710.t01	RefSeq:XP_002274214
RefSeq:XP_002274214.2	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr8:+:19635887..19649003

Molecular Weight (calculated)

69179.5 Da

IEP (calculated)

8.148

GRAVY (calculated)

-0.529

Length

609 amino acids

Sequence
(BLAST)

001: MLRALSLRRS LRAFHHYHHH HHQPTNPHSN LLKALSSTTS PNPNPNLTRP FSSLSSSPSS EAEFRKYLGY FALLLGCGIA TYYSFPFSDS AKHKKAQLFR
101: YAPLPDDLHT VSNWSGTHEV QTRVFHQPES LEELEQIVKE ANEKKQKIRP VGSGLSPNGI GLTRAGMVNL ALMDNVLDVD VEKKRVRVQA GIRVQQLVDA
201: IKDYGITLQN FASIREQQIG GIVQVGAHGT GARLPPIDEQ VISMKLVTPA KGTIEVSKER DPELFYLARC GLGGLGVVAE VTLQCVERQE LVEHTVVSNM
301: KEIKKNHKKL LSENKHVKYL YIPYTDTVVV VTCNPVSKWK GPPKFKPKYS RDEAIQHVRD LYQESLKKYS PEAITAKSSD NSEPDINELS FTELRDKLLA
401: LDPLNKDHVI QVNQAEAEFW RKSEGYRVGW SDEILGFDCG GQQWVSETCF PAGTLAKPSM KDLEYIEDLK KLIEKEEIPA PAPIEQRWTQ SSKSPMSPAS
501: SSAEDDIFSW VGIIMYLPTM DARQRKEITE EFFHYRRLSQ TQLWDLYSAY EHWAKIEVPK DKDELAALQA RLRKRFPVDE YNKARKELDP NRILSNNMLG
601: KLFPSSDTI

Best Arabidopsis Sequence Match ( AT3G47930.1 )
(BLAST)

001: MLRSLLLRRS VGHSLGTLSP SSSTIRSSFS PHRTLCTTGQ TLTPPPPPPP RPPPPPPATA SEAQFRKYAG YAALAIFSGV ATYFSFPFPE NAKHKKAQIF
101: RYAPLPEDLH TVSNWSGTHE VQTRNFNQPE NLADLEALVK ESHEKKLRIR PVGSGLSPNG IGLSRSGMVN LALMDKVLEV DKEKKRVTVQ AGIRVQQLVD
201: AIKDYGLTLQ NFASIREQQI GGIIQVGAHG TGARLPPIDE QVISMKLVTP AKGTIELSRE KDPELFHLAR CGLGGLGVVA EVTLQCVARH ELVEHTYVSN
301: LQEIKKNHKK LLSANKHVKY LYIPYTDTVV VVTCNPVSKW SGPPKDKPKY TTDEAVQHVR DLYRESIVKY RVQDSGKKSP DSSEPDIQEL SFTELRDKLL
401: ALDPLNDVHV AKVNQAEAEF WKKSEGYRVG WSDEILGFDC GGQQWVSESC FPAGTLANPS MKDLEYIEEL KKLIEKEAIP APAPIEQRWT ARSKSPISPA
501: FSTSEDDIFS WVGIIMYLPT ADPRQRKDIT DEFFHYRHLT QKQLWDQFSA YEHWAKIEIP KDKEELEALQ ARIRKRFPVD AYNKARRELD PNRILSNNMV
601: EKLFPVSTTA

Arabidopsis Description

GLDHGLDH [Source:UniProtKB/TrEMBL;Acc:A0A178VN92]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.