Factsheet for VIT_16s0039g02180.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 7
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra021373.1-P	Field mustard	cytosol	81.65	81.13
CDY23465	Canola	cytosol	81.65	81.13
CDY49923	Canola	cytosol	81.65	81.13
KRH77692	Soybean	mitochondrion	79.75	80.77
Bra032017.1-P	Field mustard	cytosol	80.38	79.87
CDY28737	Canola	cytosol	80.38	79.87
CDY43151	Canola	cytosol	80.38	79.87
AT3G03100.1	Thale cress	cytosol, mitochondrion, nucleus	80.38	79.87
KRH27732	Soybean	mitochondrion	79.75	79.75
PGSC0003DMT400001528	Potato	cytosol	79.75	79.75
Solyc03g096940.2.1	Tomato	nucleus	79.11	79.62
GSMUA_Achr8P14620_001	Banana	cytosol	77.22	78.21
GSMUA_Achr11P...	Banana	cytosol	77.22	78.21
Os10t0579300-01	Rice	mitochondrion	73.42	72.5
TraesCS1A01G197300.1	Wheat	mitochondrion	73.42	72.5
KXG38809	Sorghum	cytosol, mitochondrion, nucleus	72.78	67.25
Zm00001d030138_P001	Maize	cytosol	48.73	66.96
TraesCS1B01G211900.1	Wheat	cytosol, endoplasmic reticulum, mitochondrion	62.66	60.37
TraesCS1D01G200800.1	Wheat	cytosol	62.66	60.37
HORVU1Hr1G051280.1	Barley	cytosol, mitochondrion, plastid	72.15	56.44
Zm00001d014428_P002	Maize	mitochondrion	60.13	47.74

Protein Annotations

EntrezGene:100266690	wikigene:100266690	MapMan:2.4.1.4.1.6	ProteinID:CBI26531	ProteinID:CBI26531.3	UniProt:D7T7R0
EMBL:FN595750	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0005743	GO:GO:0005747	GO:GO:0006091	GO:GO:0006950
GO:GO:0006979	GO:GO:0008137	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009987
GO:GO:0016020	GO:GO:0022900	GO:GO:0055114	GO:GO:0070469	EntrezGene:LOC100266690	wikigene:LOC100266690
InterPro:NDUFA12	PFAM:PF05071	PANTHER:PTHR12910	PANTHER:PTHR12910:SF2	TIGR:TC54977	UniParc:UPI00015C90D3
ArrayExpress:VIT_16s0039g02180	EnsemblPlantsGene:VIT_16s0039g02180	EnsemblPlants:VIT_16s0039g02180.t01	RefSeq:XP_002276966	RefSeq:XP_002276966.1	:

Description

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 [Source:UniProtKB/TrEMBL;Acc:D7T7R0]

Coordinates

chr16:-:2254422..2266722

Molecular Weight (calculated)

18356.8 Da

IEP (calculated)

9.877

GRAVY (calculated)

-0.853

Length

158 amino acids

Sequence
(BLAST)

001: MASVLKSALQ VIRERGLGGF RRMLQEEGYL RCLADGNLLQ TKIHNIGATL VGVDKFGNKY YQKLGDTQNG RHRWVEYAQK SRYNASQVPA EWHGWLHFIT
101: DHTGDELLML KPKRYGVEHR ENFSGEGEDL IYHSKGHALN RGQRDWTRYQ PWQPTTKT

Best Arabidopsis Sequence Match ( AT3G03100.1 )
(BLAST)

001: MALTVAKSAL EAIREKGLGG FMRMIREEGF MRCLPDGNLL QTKIHNIGAT LVGVDKFGNK YYQKLGDTQY GRHRWVEYAS KDRYNASQVP AEWHGWLHFI
101: TDHTGDELLS LKPKRYGLEH KENFSGEGDA YIYHSKGHTL NPGQKNWTRY QSWVPTKTQ

Arabidopsis Description

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 [Source:UniProtKB/TrEMBL;Acc:A0A178V630]
SUBAcon: [mitochondrion,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.