Factsheet for PGSC0003DMT400001528

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
mitochondrion 4
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

cytosol: 22313117
extracellular: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g096940.2.1	Tomato	nucleus	98.1	98.73
KRH77692	Soybean	mitochondrion	80.38	81.41
GSMUA_Achr11P...	Banana	cytosol	79.75	80.77
KRH27732	Soybean	mitochondrion	80.38	80.38
GSMUA_Achr8P14620_001	Banana	cytosol	79.11	80.13
VIT_16s0039g02180.t01	Wine grape	mitochondrion	79.75	79.75
AT3G03100.1	Thale cress	cytosol, mitochondrion, nucleus	79.11	78.62
Bra021373.1-P	Field mustard	cytosol	77.85	77.36
CDY49923	Canola	cytosol	77.85	77.36
CDY23465	Canola	cytosol	77.85	77.36
CDY43151	Canola	cytosol	76.58	76.1
CDY28737	Canola	cytosol	75.95	75.47
Bra032017.1-P	Field mustard	cytosol	75.95	75.47
Os10t0579300-01	Rice	mitochondrion	74.68	73.75
TraesCS1A01G197300.1	Wheat	mitochondrion	74.05	73.12
Zm00001d030138_P001	Maize	cytosol	51.9	71.3
KXG38809	Sorghum	cytosol, mitochondrion, nucleus	74.68	69.01
TraesCS1B01G211900.1	Wheat	cytosol, endoplasmic reticulum, mitochondrion	63.29	60.98
TraesCS1D01G200800.1	Wheat	cytosol	63.29	60.98
HORVU1Hr1G051280.1	Barley	cytosol, mitochondrion, plastid	74.68	58.42
Zm00001d014428_P002	Maize	mitochondrion	59.49	47.24

Protein Annotations

EntrezGene:102605402	MapMan:2.4.1.4.1.6	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005743	GO:GO:0005747
GO:GO:0006091	GO:GO:0008137	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009719
GO:GO:0009735	GO:GO:0009987	GO:GO:0016020	GO:GO:0022900	GO:GO:0050897	GO:GO:0055114
GO:GO:0070469	UniProt:M0ZIM7	InterPro:NDUFA12	PFAM:PF05071	EnsemblPlantsGene:PGSC0003DMG402000567	PGSC:PGSC0003DMG402000567
EnsemblPlants:PGSC0003DMT400001528	PANTHER:PTHR12910	PANTHER:PTHR12910:SF2	UniParc:UPI000295F5C0	RefSeq:XP_006347567.1	:

Description

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 [Source:PGSC_GENE;Acc:PGSC0003DMG402000567]

Coordinates

chr3:-:46910362..46915572

Molecular Weight (calculated)

18390.7 Da

IEP (calculated)

9.580

GRAVY (calculated)

-0.919

Length

158 amino acids

Sequence
(BLAST)

001: MASVVRSIFQ SIKEKGIGNF LKELKQEGYV RCLADGNLLQ TKIHNIGATL VGVDKFGNKY YEKLGDTQYG RHRWVEYAQK NRYNASQVPA EWHGWLHHVT
101: DHTGDELLLL KPKRYGLEHK ENFSGEGDAY IYHSKGHTLN PGQRDWTRYQ TWQPTKKE

Best Arabidopsis Sequence Match ( AT3G03100.1 )
(BLAST)

001: MALTVAKSAL EAIREKGLGG FMRMIREEGF MRCLPDGNLL QTKIHNIGAT LVGVDKFGNK YYQKLGDTQY GRHRWVEYAS KDRYNASQVP AEWHGWLHFI
101: TDHTGDELLS LKPKRYGLEH KENFSGEGDA YIYHSKGHTL NPGQKNWTRY QSWVPTKTQ

Arabidopsis Description

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 [Source:UniProtKB/TrEMBL;Acc:A0A178V630]
SUBAcon: [mitochondrion,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.