Factsheet for Os10t0579300-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 6
cytosol 1

Predictors

GFP

MS/MS

Papers

mitochondrion: 19010998
plastid: 21433289
mitochondrion: 23027867

msms PMID: 23027867 doi

G Liu, H Tian, YQ Huang, J Hu, YX Ji, SQ Li, YQ Feng, L Guo, YG Zhu

State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan 430072, China.

msms PMID: 19010998 doi

S Huang, NL Taylor, R Narsai, H Eubel, J Whelan, AH Millar

Australian Research Council Centre of Excellence in Plant Energy Biology, M316, University of Western Australia, Crawley, 6009 Western Australia, Australia.

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d030138_P001	Maize	cytosol	60.62	84.35
TraesCS1A01G197300.1	Wheat	mitochondrion	83.75	83.75
KXG38809	Sorghum	cytosol, mitochondrion, nucleus	86.88	81.29
GSMUA_Achr8P14620_001	Banana	cytosol	78.12	80.13
KRH77692	Soybean	mitochondrion	75.62	77.56
KRH27732	Soybean	mitochondrion	75.62	76.58
GSMUA_Achr11P...	Banana	cytosol	74.38	76.28
Solyc03g096940.2.1	Tomato	nucleus	73.75	75.16
PGSC0003DMT400001528	Potato	cytosol	73.75	74.68
VIT_16s0039g02180.t01	Wine grape	mitochondrion	72.5	73.42
CDY49923	Canola	cytosol	71.25	71.7
CDY23465	Canola	cytosol	71.25	71.7
Bra021373.1-P	Field mustard	cytosol	71.25	71.7
AT3G03100.1	Thale cress	cytosol, mitochondrion, nucleus	70.0	70.44
CDY43151	Canola	cytosol	69.38	69.81
CDY28737	Canola	cytosol	69.38	69.81
Bra032017.1-P	Field mustard	cytosol	69.38	69.81
TraesCS1B01G211900.1	Wheat	cytosol, endoplasmic reticulum, mitochondrion	70.0	68.29
TraesCS1D01G200800.1	Wheat	cytosol	69.38	67.68
HORVU1Hr1G051280.1	Barley	cytosol, mitochondrion, plastid	83.75	66.34
Zm00001d014428_P002	Maize	mitochondrion	70.62	56.78

Protein Annotations

MapMan:2.4.1.4.1.6	EntrezGene:4349513	ProteinID:AAG46149.1	ProteinID:AAP55177.1	EMBL:AK103692	ProteinID:BAF27343.1
ProteinID:BAT12236.1	ProteinID:EEE51469.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005743	GO:GO:0005747
GO:GO:0006091	GO:GO:0006950	GO:GO:0006979	GO:GO:0008137	GO:GO:0008150	GO:GO:0008152
GO:GO:0009055	GO:GO:0009719	GO:GO:0009735	GO:GO:0009987	GO:GO:0016020	GO:GO:0022900
GO:GO:0050897	GO:GO:0055114	GO:GO:0070469	InterPro:NDUFA12	EnsemblPlantsGene:Os10g0579300	EnsemblPlants:Os10t0579300-01
PFAM:PF05071	PANTHER:PTHR12910	PANTHER:PTHR12910:SF2	UniProt:Q7XBT1	UniParc:UPI00000A74A0	RefSeq:XP_015614521.1

Description

NADH:ubiquinone oxidoreductase 17.2 kD subunit family protein. (Os10t0579300-01)

Coordinates

chr10:-:23100368..23103259

Molecular Weight (calculated)

18518.6 Da

IEP (calculated)

7.087

GRAVY (calculated)

-0.902

Length

160 amino acids

Sequence
(BLAST)

001: MAAVVRGVLN GIREKGLSNF LRHARDEGYF KCLLDGNLLQ TKIHNIGATL VGVDKFGNKY YEKLHDTQYG RHRWVEYAEK GRYNASQVPP EWHGWLHHIT
101: DSTGDELLEQ NAKAYIVDHK ENFSGEGEEL IYHSKGHALN PGQRDWTRYQ PWEPKKEEAT

Best Arabidopsis Sequence Match ( AT3G03100.1 )
(BLAST)

001: MALTVAKSAL EAIREKGLGG FMRMIREEGF MRCLPDGNLL QTKIHNIGAT LVGVDKFGNK YYQKLGDTQY GRHRWVEYAS KDRYNASQVP AEWHGWLHFI
101: TDHTGDELLS LKPKRYGLEH KENFSGEGDA YIYHSKGHTL NPGQKNWTRY QSWVPTKTQ

Arabidopsis Description

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 [Source:UniProtKB/TrEMBL;Acc:A0A178V630]
SUBAcon: [mitochondrion,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.