CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
mitochondrion 4
peroxisome 1
cytosol 1

Predictors

GFP

MS/MS

Papers

mitochondrion: 27780359

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH27732	Soybean	mitochondrion	97.44	96.2
PGSC0003DMT400001528	Potato	cytosol	81.41	80.38
Solyc03g096940.2.1	Tomato	nucleus	80.77	80.25
VIT_16s0039g02180.t01	Wine grape	mitochondrion	80.77	79.75
GSMUA_Achr8P14620_001	Banana	cytosol	78.85	78.85
Bra021373.1-P	Field mustard	cytosol	78.85	77.36
CDY49923	Canola	cytosol	78.85	77.36
CDY23465	Canola	cytosol	78.85	77.36
GSMUA_Achr11P...	Banana	cytosol	76.92	76.92
AT3G03100.1	Thale cress	cytosol, mitochondrion, nucleus	78.21	76.73
CDY43151	Canola	cytosol	77.56	76.1
Os10t0579300-01	Rice	mitochondrion	77.56	75.62
CDY28737	Canola	cytosol	76.92	75.47
Bra032017.1-P	Field mustard	cytosol	76.92	75.47
Zm00001d030138_P001	Maize	cytosol	52.56	71.3
TraesCS1A01G197300.1	Wheat	mitochondrion	73.08	71.25
KXG38809	Sorghum	cytosol, mitochondrion, nucleus	76.92	70.18
TraesCS1B01G211900.1	Wheat	cytosol, endoplasmic reticulum, mitochondrion	63.46	60.37
TraesCS1D01G200800.1	Wheat	cytosol	63.46	60.37
HORVU1Hr1G051280.1	Barley	cytosol, mitochondrion, plastid	73.72	56.93
Zm00001d014428_P002	Maize	mitochondrion	62.82	49.25

Protein Annotations

MapMan:2.4.1.4.1.6	EMBL:ACUP02000681	EnsemblPlantsGene:GLYMA_01G228400	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005743	GO:GO:0005747
GO:GO:0006091	GO:GO:0006950	GO:GO:0006979	GO:GO:0008137	GO:GO:0008150	GO:GO:0008152
GO:GO:0009055	GO:GO:0009987	GO:GO:0016020	GO:GO:0022900	GO:GO:0055114	GO:GO:0070469
UniProt:I1JAH2	EnsemblPlants:KRH77692	ProteinID:KRH77692	ProteinID:KRH77692.1	InterPro:NDUFA12	PFAM:PF05071
PANTHER:PTHR12910	PANTHER:PTHR12910:SF2	UniParc:UPI00023BEBE7	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:55645520..55648483

Molecular Weight (calculated)

18119.4 Da

IEP (calculated)

9.411

GRAVY (calculated)

-0.839

Length

156 amino acids

Sequence
(BLAST)

001: MASVVKNVLK SVREKGFGAF LRELKDEGYL RCLPDGNLLQ TKIHNIGATL VGVDKFGNKY YEKLGDTQYG RHRWIEYAEK TRYNASQVPA EWHGWLHFIT
101: DHTGDELLLL KPKRYGVEHK ENLSGEGEQY IYHSKGHALN PGQRNWTRYQ PWESKA

Best Arabidopsis Sequence Match ( AT3G03100.1 )
(BLAST)

001: MALTVAKSAL EAIREKGLGG FMRMIREEGF MRCLPDGNLL QTKIHNIGAT LVGVDKFGNK YYQKLGDTQY GRHRWVEYAS KDRYNASQVP AEWHGWLHFI
101: TDHTGDELLS LKPKRYGLEH KENFSGEGDA YIYHSKGHTL NPGQKNWTRY QSWVPTKTQ

Arabidopsis Description

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 [Source:UniProtKB/TrEMBL;Acc:A0A178V630]
SUBAcon: [mitochondrion,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.