Factsheet for Zm00001d004956_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 6
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	mitochondrion

extracellular: 20408568
mitochondrion: 22607058
plasma membrane: 23508561
mitochondrion: 27297264
plasma membrane: 27341663

msms PMID: 22607058 doi

D Dahal, BP Mooney, KJ Newton

Division of Biological Sciences, University of Missouri, Columbia, MO 65211, USA.

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 23508561 doi

Z Zhang, P Voothuluru, M Yamaguchi, RE Sharp, SC Peck

Division of Biochemistry, University of Missouri Columbia, MO, USA ; Christopher S. Bond Life Sciences Center, University of Missouri Columbia, MO, USA ; Interdisciplinary Plant Group, University of Missouri Columbia, MO, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
GRMZM5G834128_P01
GRMZM5G839924_P01
GRMZM5G856027_P02
Zm00001d006421_P002
Zm00001d006714_P001
Zm00001d007048_P001
Zm00001d011732_P001
Zm00001d012469_P001
Zm00001d012741_P001
Zm00001d012742_P001
Zm00001d013156_P001
Zm00001d014428_P002
Zm00001d016566_P001
Zm00001d018479_P001
Zm00001d020930_P001
Zm00001d021536_P003
Zm00001d021958_P002
Zm00001d022341_P001
Zm00001d027389_P001
Zm00001d027493_P001
Zm00001d028918_P001
Zm00001d030138_P001
Zm00001d031431_P001
Zm00001d031975_P001
Zm00001d034244_P001
Zm00001d038508_P001
Zm00001d038658_P001
Zm00001d043620_P001
Zm00001d046083_P001
Zm00001d046260_P002
Zm00001d050384_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G47930.1	Zm00001d013156_P001	AT1G79010.1	12837548
AT3G47930.1	Zm00001d034244_P001	AT1G79010.1	12837548
AT3G47930.1	Zm00001d027493_P001	AT2G02050.1	12837548
AT3G47930.1	Zm00001d018479_P001	AT2G20360.1	12837548
AT3G47930.1	Zm00001d012469_P001	AT2G31490.1	12837548
AT3G47930.1	Zm00001d012741_P001	AT2G31490.1	12837548
AT3G47930.1	Zm00001d012742_P001	AT2G31490.1	12837548
AT3G47930.1	Zm00001d020930_P001	AT2G42310.1	12837548
AT3G47930.1	Zm00001d031431_P001	AT2G42310.1	12837548
AT3G47930.1	Zm00001d031975_P001	AT2G47690.1	12837548
AT3G47930.1	Zm00001d014428_P002	AT3G03100.1	12837548
AT3G47930.1	Zm00001d030138_P001	AT3G03100.1	12837548
AT3G47930.1	Zm00001d038508_P001	AT3G08610.1	12837548
AT3G47930.1	Zm00001d027389_P001	AT3G12260.1	12837548
AT3G47930.1	Zm00001d016566_P001	AT3G48680.1	12837548
AT3G47930.1	Zm00001d020930_P001	AT3G57785.1	12837548
AT3G47930.1	Zm00001d031431_P001	AT3G57785.1	12837548
AT3G47930.1	Zm00001d038658_P001	AT4G02580.1	12837548
AT3G47930.1	Zm00001d050384_P001	AT4G16450.1	12837548
AT3G47930.1	Zm00001d006421_P002	AT4G20150.1	12837548
AT3G47930.1	Zm00001d021536_P003	AT4G20150.1	12837548
AT3G47930.1	Zm00001d007048_P001	AT5G08530.1	12837548
AT3G47930.1	Zm00001d022341_P001	AT5G08530.1	12837548
AT3G47930.1	Zm00001d011732_P001	AT5G11770.1	12837548
AT3G47930.1	Zm00001d043620_P001	AT5G11770.1	12837548
AT3G47930.1	Zm00001d028918_P001	AT5G52840.1	12837548
AT3G47930.1	Zm00001d006714_P001	AT5G67590.1	12837548
AT3G47930.1	Zm00001d021958_P002	AT5G67590.1	12837548
AT3G47930.1	GRMZM5G839924_P01	ATMG00070.1	12837548
AT3G47930.1	GRMZM5G856027_P02	ATMG00510.1	12837548
AT3G47930.1	Zm00001d046260_P002	ATMG00510.1	12837548
AT3G47930.1	GRMZM5G834128_P01	ATMG00513.1	12837548
AT3G47930.1	Zm00001d046083_P001	ATMG01275.1	12837548

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG27706	Sorghum	mitochondrion	61.17	94.53
TraesCS5D01G140400.2	Wheat	mitochondrion	55.97	86.64
Os11t0143500-01	Rice	mitochondrion	55.75	86.45
TraesCS5B01G132600.1	Wheat	plastid	55.75	86.3
HORVU5Hr1G043060.2	Barley	mitochondrion	55.75	86.3
Os12t0139600-01	Rice	mitochondrion	55.64	86.28
TraesCS5A01G132300.2	Wheat	mitochondrion	55.2	81.01
KRH71746	Soybean	mitochondrion	45.91	71.06
Solyc10g079470.2.1	Tomato	nucleus	45.91	70.58
VIT_08s0007g05710.t01	Wine grape	mitochondrion	47.01	69.79
PGSC0003DMT400020997	Potato	mitochondrion	45.02	69.1
CDY36916	Canola	mitochondrion	45.24	68.05
Bra018100.1-P	Field mustard	mitochondrion	45.24	68.05
CDY24145	Canola	mitochondrion	45.02	67.83
AT3G47930.1	Thale cress	mitochondrion	45.58	67.54
KRH33172	Soybean	mitochondrion	42.37	65.69
GSMUA_Achr6P21390_001	Banana	cytosol	31.08	64.01

Protein Annotations

KEGG:00053+1.3.2.3	MapMan:10.3.1.8	MapMan:15.1.6.3	Gene3D:3.30.43.10	Gene3D:3.30.465.10	Gene3D:3.40.1340.10
Gene3D:3.90.940.20	UniProt:A0A1D6EIA5	InterPro:ALO	InterPro:FAD-bd_2	InterPro:FAD-bd_2-like_sf	InterPro:FAD-bd_2_sub1
InterPro:FAD_lactone_oxidase	InterPro:GL_DH	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003824	GO:GO:0003885	GO:GO:0003899	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016491	GO:GO:0016614	GO:GO:0016633
GO:GO:0016740	GO:GO:0016899	GO:GO:0050660	GO:GO:0055114	GO:GO:0071949	InterPro:IPR016166
InterPro:IPR016167	InterPro:IPR035913	InterPro:IPR036710	ProteinID:ONM19846.1	InterPro:Oxid_FAD_bind_N	PFAM:PD005155
PFAM:PF01191	PFAM:PF01565	PFAM:PF03871	PFAM:PF04030	PFscan:PS51387	PANTHER:PTHR43762
PANTHER:PTHR43762:SF1	InterPro:RNA_pol_Rpb5_N	InterPro:RNA_pol_Rpb5_N_sf	InterPro:RNA_pol_subH/Rpb5_C	InterPro:RPB5-like	SUPFAM:SSF53036
SUPFAM:SSF55287	SUPFAM:SSF56176	TIGRFAMs:TIGR01676	UniParc:UPI000842AB7A	EnsemblPlantsGene:Zm00001d004956	EnsemblPlants:Zm00001d004956_P001
EnsemblPlants:Zm00001d004956_T001	SEG:seg	:	:	:	:

Description

galactono lactone dehydrogenase1

Coordinates

chr2:+:150578240..150597318

Molecular Weight (calculated)

101491.0 Da

IEP (calculated)

8.009

GRAVY (calculated)

-0.311

Length

904 amino acids

Sequence
(BLAST)

001: MRHLLLSRFL RRGGGSGIPN GHYHHLPLLR ALSSSPSPVS SDAELRKYAG YALLLLGCGA ATYYSFPFPA DALHKKAVPF RYAPLPEDLH AVSNWSGTHE
101: VHARVLLQPD SLPALEGALA AAHKERRKLR PLGSGLSPNG IALSRAGMVN LALMDKVLDV DAKKKTVTVQ AGIRVAELVD ALREHGLTLQ NFASIREQQV
201: GGFTQVGAHG TGATLPPVDE QVISMKLVTP AKGTIELSRE KDPELFYLAR CGLGGLGVVA EVTLQCVERH QLVEHTFVSN ADEVKKNHKK WLSENKHIKY
301: LWIPYTDTVV VVQCNPPSKW ITPKLASKYG KDEALQHVRD LYRESLKKYR TETESKDPEI DTLSFTELRD KLLALDPLDK DHVVKINKAE AEYWKKSEGY
401: RMGWSDEILG FDCGGQQWVS ENCFPTGTLA KPSMKDLDYI DKLLQLIEKE EIPAPGPIEQ RWTARSKSPM SPASSSEEDD VFSWVGIIMY LPTSDARQRK
501: EITEEFFSYR SLARSLWDDY SAYEHWAKIE VPKDKDELAE LQARLRKRFP VDAYNKARME LDPNKVLSNA KLEKMFPVLE PPHQTKPKPP KNPSAPNPRA
601: KMDPHQFAPS QQSALTMESA ESTAAAAARA SNGAARAVVE DDDEDDDVPE VAACISTMLD RGGSVESHRL FLARRTALEM LRDRGYAVPE EELARTLPEF
701: RAWWEYRPEL ERLAFSTTLT SDPSSKVWLP VRFKVITVLV LMIVRVGTIL QLGWWLFVPV VPAIIEVKVV FCPPGPVKIA AIRLIYTEVK DENLSRLILI
801: LQGKIMSTTR ESIKEIFRFK VDTFQITELL VNITKHVLKP KHEVLTAEGK AKLLKEYNVV DSQLPRMLEN DAVARYYGLG KGTVVKVIYD SELTGNHVTY
901: RCIT

Best Arabidopsis Sequence Match ( AT3G47930.1 )
(BLAST)

001: MLRSLLLRRS VGHSLGTLSP SSSTIRSSFS PHRTLCTTGQ TLTPPPPPPP RPPPPPPATA SEAQFRKYAG YAALAIFSGV ATYFSFPFPE NAKHKKAQIF
101: RYAPLPEDLH TVSNWSGTHE VQTRNFNQPE NLADLEALVK ESHEKKLRIR PVGSGLSPNG IGLSRSGMVN LALMDKVLEV DKEKKRVTVQ AGIRVQQLVD
201: AIKDYGLTLQ NFASIREQQI GGIIQVGAHG TGARLPPIDE QVISMKLVTP AKGTIELSRE KDPELFHLAR CGLGGLGVVA EVTLQCVARH ELVEHTYVSN
301: LQEIKKNHKK LLSANKHVKY LYIPYTDTVV VVTCNPVSKW SGPPKDKPKY TTDEAVQHVR DLYRESIVKY RVQDSGKKSP DSSEPDIQEL SFTELRDKLL
401: ALDPLNDVHV AKVNQAEAEF WKKSEGYRVG WSDEILGFDC GGQQWVSESC FPAGTLANPS MKDLEYIEEL KKLIEKEAIP APAPIEQRWT ARSKSPISPA
501: FSTSEDDIFS WVGIIMYLPT ADPRQRKDIT DEFFHYRHLT QKQLWDQFSA YEHWAKIEIP KDKEELEALQ ARIRKRFPVD AYNKARRELD PNRILSNNMV
601: EKLFPVSTTA

Arabidopsis Description

GLDHGLDH [Source:UniProtKB/TrEMBL;Acc:A0A178VN92]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.