Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 4
- golgi 4
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
mitochondrion:
27297264
mitochondrion: 29575040 |
msms PMID:
27297264
doi
Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.
msms PMID:
29575040
doi
Department of Molecular Biology and Genetics, Aarhus University, DK-4200 Slagelse, Denmark., Key Laboratory of Plant Molecular Physiology, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China., Key Laboratory of Plant Resources and Beijing Botanical Garden, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES18401 | Sorghum | extracellular | 98.44 | 98.44 |
| KRH40639 | Soybean | extracellular | 81.25 | 81.25 |
| GSMUA_Achr10P... | Banana | extracellular | 82.81 | 80.3 |
| KRH00516 | Soybean | extracellular | 79.69 | 79.69 |
| TraesCS1D01G302300.1 | Wheat | extracellular | 81.25 | 78.79 |
| TraesCS1A01G302900.1 | Wheat | extracellular | 81.25 | 78.79 |
| Os05t0481600-01 | Rice | mitochondrion | 81.25 | 78.79 |
| TraesCS1B01G313200.1 | Wheat | extracellular | 79.69 | 77.27 |
| Bra029702.1-P | Field mustard | endoplasmic reticulum, extracellular | 76.56 | 75.38 |
| CDY27992 | Canola | endoplasmic reticulum, extracellular | 76.56 | 75.38 |
| Bra001351.1-P | Field mustard | endoplasmic reticulum, extracellular | 75.0 | 73.85 |
| CDY66585 | Canola | endoplasmic reticulum, extracellular | 75.0 | 73.85 |
| CDY35988 | Canola | endoplasmic reticulum, extracellular | 75.0 | 73.85 |
| CDY22155 | Canola | endoplasmic reticulum, extracellular | 75.0 | 73.85 |
| CDY00662 | Canola | endoplasmic reticulum, extracellular | 75.0 | 73.85 |
| CDX73935 | Canola | endoplasmic reticulum, extracellular | 75.0 | 73.85 |
| AT3G08610.1 | Thale cress | endoplasmic reticulum, extracellular | 75.0 | 73.85 |
| PGSC0003DMT400071247 | Potato | endoplasmic reticulum, extracellular | 78.12 | 73.53 |
| VIT_11s0103g00270.t01 | Wine grape | extracellular | 75.0 | 72.73 |
| Bra040051.1-P | Field mustard | endoplasmic reticulum, extracellular | 73.44 | 72.31 |
| HORVU1Hr1G069360.1 | Barley | cytosol | 82.81 | 55.21 |
| HORVU1Hr1G069340.1 | Barley | plastid | 82.81 | 40.77 |
Protein Annotations
| EntrezGene:100501943 | MapMan:35.2 | ProteinID:AQK86786.1 | UniProt:B6SP36 | EMBL:BT086664 | EMBL:EU954501 |
| EMBL:EU954716 | EMBL:EU954775 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005739 | GO:GO:0005747 | GO:GO:0016020 | GO:GO:0016021 | InterPro:NADH_Ub_cplx-1_asu_su-1 | PFAM:PF15879 |
| PANTHER:PTHR17098 | TMHMM:TMhelix | UniParc:UPI000182B1D4 | EnsemblPlantsGene:Zm00001d038508 | EnsemblPlants:Zm00001d038508_P001 | EnsemblPlants:Zm00001d038508_T001 |
| SEG:seg | : | : | : | : | : |
Description
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1
Coordinates
chr6:+:158903333..158906310
Molecular Weight (calculated)
7213.9 Da
IEP (calculated)
9.341
GRAVY (calculated)
-0.189
Length
64 amino acids
Sequence
(BLAST)
(BLAST)
1: MARLHWLEAV LPLGIIGGML CIMGNAQYFI HKAAHGRPKH IGNDMWDVAM ERRDKKLVEQ SSGN
1: MSLVWLEAML PLGIIGGMLC IMGNSQYYIH KAYHGRPKHI GHDEWDVAME RRDKKVVEKA AAPSS
Arabidopsis Description
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9Z5]
SUBAcon: [endoplasmic reticulum,extracellular]
SUBAcon: [endoplasmic reticulum,extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.