Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 6
- vacuole 5
- plasma membrane 5
- golgi 5
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH40639 | Soybean | extracellular | 75.0 | 79.69 |
| KRH00516 | Soybean | extracellular | 75.0 | 79.69 |
| EES18401 | Sorghum | extracellular | 75.0 | 79.69 |
| CDY22155 | Canola | endoplasmic reticulum, extracellular | 75.0 | 78.46 |
| CDY66585 | Canola | endoplasmic reticulum, extracellular | 75.0 | 78.46 |
| Zm00001d038508_P001 | Maize | mitochondrion | 73.53 | 78.12 |
| AT3G08610.1 | Thale cress | endoplasmic reticulum, extracellular | 73.53 | 76.92 |
| Bra040051.1-P | Field mustard | endoplasmic reticulum, extracellular | 73.53 | 76.92 |
| CDY00662 | Canola | endoplasmic reticulum, extracellular | 73.53 | 76.92 |
| CDY35988 | Canola | endoplasmic reticulum, extracellular | 73.53 | 76.92 |
| Bra001351.1-P | Field mustard | endoplasmic reticulum, extracellular | 72.06 | 75.38 |
| CDY27992 | Canola | endoplasmic reticulum, extracellular | 72.06 | 75.38 |
| CDX73935 | Canola | endoplasmic reticulum, extracellular | 72.06 | 75.38 |
| Bra029702.1-P | Field mustard | endoplasmic reticulum, extracellular | 72.06 | 75.38 |
| GSMUA_Achr10P... | Banana | extracellular | 72.06 | 74.24 |
| TraesCS1A01G302900.1 | Wheat | extracellular | 69.12 | 71.21 |
| TraesCS1D01G302300.1 | Wheat | extracellular | 69.12 | 71.21 |
| VIT_11s0103g00270.t01 | Wine grape | extracellular | 69.12 | 71.21 |
| TraesCS1B01G313200.1 | Wheat | extracellular | 67.65 | 69.7 |
| Os05t0481600-01 | Rice | mitochondrion | 63.24 | 65.15 |
| HORVU1Hr1G069360.1 | Barley | cytosol | 70.59 | 50.0 |
| HORVU1Hr1G069340.1 | Barley | plastid | 70.59 | 36.92 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400071247 | EnsemblPlantsGene:PGSC0003DMG400027701 | EntrezGene:102590063 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005739 | GO:GO:0005747 | GO:GO:0016020 | GO:GO:0016021 | InterPro:NADH_Ub_cplx-1_asu_su-1 |
| PANTHER:PTHR17098 | PFAM:PF15879 | PGSC:PGSC0003DMG400027701 | RefSeq:XP_006362334.1 | RefSeq:XP_015158420.1 | RefSeq:XP_015158421.1 |
| SEG:seg | TMHMM:TMhelix | UniParc:UPI000294D6B2 | UniProt:M1CNF0 | MapMan:35.1 | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400027701]
Coordinates
chr10:+:48655959..48661394
Molecular Weight (calculated)
7620.4 Da
IEP (calculated)
9.340
GRAVY (calculated)
-0.041
Length
68 amino acids
Sequence
(BLAST)
(BLAST)
1: MSLRWLEAVL PLGIIAGFLC VMGNAQYFIH KAAHGRPKHI GNDMWDVAME RRDKKMMEML ASPSSSSS
1: MSLVWLEAML PLGIIGGMLC IMGNSQYYIH KAYHGRPKHI GHDEWDVAME RRDKKVVEKA AAPSS
Arabidopsis Description
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9Z5]
SUBAcon: [endoplasmic reticulum,extracellular]
SUBAcon: [endoplasmic reticulum,extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.