Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 6
- golgi 5
- extracellular 6
- vacuole 4
- plasma membrane 4
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY00662 | Canola | endoplasmic reticulum, extracellular | 98.46 | 98.46 |
| CDY35988 | Canola | endoplasmic reticulum, extracellular | 98.46 | 98.46 |
| Bra029702.1-P | Field mustard | endoplasmic reticulum, extracellular | 96.92 | 96.92 |
| Bra040051.1-P | Field mustard | endoplasmic reticulum, extracellular | 96.92 | 96.92 |
| CDY22155 | Canola | endoplasmic reticulum, extracellular | 96.92 | 96.92 |
| CDY27992 | Canola | endoplasmic reticulum, extracellular | 96.92 | 96.92 |
| CDY66585 | Canola | endoplasmic reticulum, extracellular | 96.92 | 96.92 |
| CDX73935 | Canola | endoplasmic reticulum, extracellular | 95.38 | 95.38 |
| Bra001351.1-P | Field mustard | endoplasmic reticulum, extracellular | 95.38 | 95.38 |
| TraesCS1D01G302300.1 | Wheat | extracellular | 76.92 | 75.76 |
| TraesCS1A01G302900.1 | Wheat | extracellular | 76.92 | 75.76 |
| Zm00001d038508_P001 | Maize | mitochondrion | 73.85 | 75.0 |
| TraesCS1B01G313200.1 | Wheat | extracellular | 75.38 | 74.24 |
| PGSC0003DMT400071247 | Potato | endoplasmic reticulum, extracellular | 76.92 | 73.53 |
| KRH40639 | Soybean | extracellular | 72.31 | 73.44 |
| EES18401 | Sorghum | extracellular | 72.31 | 73.44 |
| KRH00516 | Soybean | extracellular | 70.77 | 71.88 |
| VIT_11s0103g00270.t01 | Wine grape | extracellular | 72.31 | 71.21 |
| Os05t0481600-01 | Rice | mitochondrion | 69.23 | 68.18 |
| GSMUA_Achr10P... | Banana | extracellular | 64.62 | 63.64 |
| HORVU1Hr1G069360.1 | Barley | cytosol | 78.46 | 53.12 |
| HORVU1Hr1G069340.1 | Barley | plastid | 78.46 | 39.23 |
Protein Annotations
| MapMan:35.1 | EntrezGene:820008 | UniProt:A0A178VFT6 | ProteinID:AAG51367.1 | ProteinID:AEE74653.1 | EMBL:AK220620 |
| EMBL:AK227324 | ArrayExpress:AT3G08610 | EnsemblPlantsGene:AT3G08610 | RefSeq:AT3G08610 | TAIR:AT3G08610 | RefSeq:AT3G08610-TAIR-G |
| EnsemblPlants:AT3G08610.1 | TAIR:AT3G08610.1 | EMBL:AY088759 | EMBL:BT006372 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005739 | GO:GO:0005743 | GO:GO:0005747 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0055114 | GO:GO:0070469 | InterPro:NADH_Ub_cplx-1_asu_su-1 |
| RefSeq:NP_566330.1 | ProteinID:OAP04225.1 | PFAM:PF15879 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 |
| PO:PO:0025281 | PANTHER:PTHR17098 | UniProt:Q9C9Z5 | TMHMM:TMhelix | UniParc:UPI000009E164 | SEG:seg |
Description
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9Z5]
Coordinates
chr3:-:2615426..2616934
Molecular Weight (calculated)
7338.0 Da
IEP (calculated)
8.499
GRAVY (calculated)
-0.189
Length
65 amino acids
Sequence
(BLAST)
(BLAST)
1: MSLVWLEAML PLGIIGGMLC IMGNSQYYIH KAYHGRPKHI GHDEWDVAME RRDKKVVEKA AAPSS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.