Factsheet for Zm00001d034244_P001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular

Predictor Summary:

mitochondrion 6
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plasma membrane
Any Predictor:	mitochondrion
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

extracellular: 20408568
plasma membrane: 27341663

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d013156_P001	Maize	mitochondrion	96.86	96.86
TraesCS5D01G418000.1	Wheat	mitochondrion	91.93	91.93
TraesCS5B01G413000.1	Wheat	golgi	91.93	91.93
TraesCS5A01G408100.1	Wheat	plastid	91.93	91.93
GSMUA_Achr5P02040_001	Banana	mitochondrion	54.71	86.52
KXG37457	Sorghum	mitochondrion	96.86	86.06
KRH21490	Soybean	mitochondrion	82.51	82.88
GSMUA_Achr2P13190_001	Banana	mitochondrion	81.17	82.65
KRH10832	Soybean	mitochondrion	82.06	82.43
CDY40039	Canola	mitochondrion	78.92	80.37
PGSC0003DMT400084285	Potato	mitochondrion	82.51	80.35
AT1G16700.1	Thale cress	mitochondrion	79.82	80.18
Solyc10g051350.1.1	Tomato	mitochondrion	82.06	79.91
CDX88498	Canola	mitochondrion	79.37	79.73
VIT_03s0063g02550.t01	Wine grape	mitochondrion	79.37	79.37
CDY57950	Canola	mitochondrion	78.92	79.28
AT1G79010.1	Thale cress	mitochondrion	78.92	79.28
Bra003627.1-P	Field mustard	mitochondrion	78.92	79.28
Bra035083.1-P	Field mustard	mitochondrion	78.92	79.28
CDX87415	Canola	mitochondrion	78.92	79.28
Solyc01g109620.2.1	Tomato	plastid	81.17	79.04
PGSC0003DMT400001914	Potato	mitochondrion	81.17	79.04
CDY35112	Canola	mitochondrion	78.48	78.83
KRH60378	Soybean	extracellular	76.68	77.03
HORVU5Hr1G098910.3	Barley	plastid	79.37	59.8
GRMZM5G866223_P01	Maize	plastid	18.39	22.78

Protein Annotations

EntrezGene:100283266	MapMan:2.4.1.2.4	Gene3D:3.30.70.3270	InterPro:4Fe4S_Fe-S-bd	InterPro:4Fe4S_Fe_S_CS	UniProt:B4FUH1
EMBL:BT040759	EMBL:EU952296	EMBL:EU964090	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005575	GO:GO:0008150	GO:GO:0008152	GO:GO:0016020	GO:GO:0016651	GO:GO:0051539
GO:GO:0055114	InterPro:IPR017896	HAMAP:MF_01351	InterPro:NADH_quinone_OxRdtase_chainI	ProteinID:ONM09843.1	PFAM:PF12838
ScanProsite:PS00198	PFscan:PS51379	PANTHER:PTHR10849	PANTHER:PTHR10849:SF20	SUPFAM:SSF54862	TIGRFAMs:TIGR01971
UniParc:UPI00017B78EA	EnsemblPlantsGene:Zm00001d034244	EnsemblPlants:Zm00001d034244_P001	EnsemblPlants:Zm00001d034244_T001	SEG:seg	:

Description

NADH dehydrogenase [ubiquinone] iron-sulfur protein 8-B mitochondrial

Coordinates

chr1:-:287675715..287678872

Molecular Weight (calculated)

25726.6 Da

IEP (calculated)

4.987

GRAVY (calculated)

-0.562

Length

223 amino acids

Sequence
(BLAST)

001: MAALLARQAA QALRARQSAQ LGPTTSAMQG HLRTYMNAGI PKRFKEEEEK EQLAKDIAKD WNAVFERSIN TLFLTEMVRG LMLTLKYFFE RNVTINYPFE
101: KGPLSPRFRG EHALRRYESG EERCIACKLC EAICPAQAIT IEAEEREDGS RRTTRYDIDM TKCIYCGFCQ EACPVDAIVE GPNFEFATET HEELLYDKEK
201: LLENGDRWET EIAENLRSES LYR

Best Arabidopsis Sequence Match ( AT1G79010.1 )
(BLAST)

001: MASILARRSL NTLRARHLVL SGQALQGSHL SRLQSRGISY GSNKDDEEAE QLSKEISKDW NTVFERSINT LFLTEMVRGL SLTLKYFFDP KVTINYPFEK
101: GPLSPRFRGE HALRRYPTGE ERCIACKLCE AVCPAQAITI EAEEREDGSR RTTRYDIDMT KCIYCGFCQE ACPVDAIVEG PNFEFATETH EELLYDKEKL
201: LENGDRWETE IAENLRSESL YR

Arabidopsis Description

NADH dehydrogenase [ubiquinone] iron-sulfur protein 8-A, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q42599]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.