Factsheet for PGSC0003DMT400001914

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 2
mitochondrion 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
EpiLoc:	mitochondrion
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Plant-mPloc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g109620.2.1	Tomato	plastid	100.0	100.0
PGSC0003DMT400084285	Potato	mitochondrion	96.94	96.94
KRH21490	Soybean	mitochondrion	86.03	88.74
KRH10832	Soybean	mitochondrion	86.03	88.74
VIT_03s0063g02550.t01	Wine grape	mitochondrion	86.03	88.34
GSMUA_Achr5P02040_001	Banana	mitochondrion	53.71	87.23
AT1G79010.1	Thale cress	mitochondrion	82.97	85.59
CDY57950	Canola	mitochondrion	82.53	85.14
CDX88498	Canola	mitochondrion	82.53	85.14
Bra003627.1-P	Field mustard	mitochondrion	82.53	85.14
CDY40039	Canola	mitochondrion	81.22	84.93
CDX87415	Canola	mitochondrion	82.1	84.68
Bra035083.1-P	Field mustard	mitochondrion	82.1	84.68
AT1G16700.1	Thale cress	mitochondrion	81.66	84.23
CDY35112	Canola	mitochondrion	81.22	83.78
GSMUA_Achr2P13190_001	Banana	mitochondrion	79.48	83.11
Zm00001d013156_P001	Maize	mitochondrion	79.48	81.61
TraesCS5A01G408100.1	Wheat	plastid	79.48	81.61
TraesCS5B01G413000.1	Wheat	golgi	79.48	81.61
TraesCS5D01G418000.1	Wheat	mitochondrion	79.48	81.61
KRH60378	Soybean	extracellular	79.04	81.53
Zm00001d034244_P001	Maize	extracellular, plasma membrane	79.04	81.17
KXG37457	Sorghum	mitochondrion	79.04	72.11
HORVU5Hr1G098910.3	Barley	plastid	69.0	53.38

Protein Annotations

EntrezGene:102585803	MapMan:2.4.1.2.4	Gene3D:3.30.70.3270	InterPro:4Fe4S_Fe-S-bd	InterPro:4Fe4S_Fe_S_CS	ProteinID:ABA81853
ProteinID:ABA81853.1	EMBL:DQ207845	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575
GO:GO:0008150	GO:GO:0008152	GO:GO:0016020	GO:GO:0016651	GO:GO:0051539	GO:GO:0055114
InterPro:IPR017896	HAMAP:MF_01351	InterPro:NADH_quinone_OxRdtase_chainI	RefSeq:NP_001275342.1	PFAM:PF12838	EnsemblPlantsGene:PGSC0003DMG400000726
PGSC:PGSC0003DMG400000726	EnsemblPlants:PGSC0003DMT400001914	ScanProsite:PS00198	PFscan:PS51379	PANTHER:PTHR10849	PANTHER:PTHR10849:SF20
UniProt:Q38M79	SUPFAM:SSF54862	TIGRFAMs:TIGR01971	UniParc:UPI00005CA25B	SEG:seg	:

Description

NADH:ubiquinone oxidoreductase [Source:PGSC_GENE;Acc:PGSC0003DMG400000726]

Coordinates

chr1:-:85925678..85931347

Molecular Weight (calculated)

26291.1 Da

IEP (calculated)

5.107

GRAVY (calculated)

-0.541

Length

229 amino acids

Sequence
(BLAST)

001: MAAILARKSL SALRSRQLVL AGQAWQGTNT PNGTLLGTRS FATKHSFSTD KDDEEREQLA KELSKDWNSV FERSINTLFL TEMVRGLMLT LKYFFEKKVT
101: INYPFEKGPL SPRFRGEHAL RRYATGEERC IACKLCEAIC PAQAITIEAE EREDGSRRTT RYDIDMTKCI YCGFCQEACP VDAIVEGPNF EFATETHEEL
201: LYDKEKLLEN GDRWETEIAE NLRSESLYR

Best Arabidopsis Sequence Match ( AT1G79010.1 )
(BLAST)

001: MASILARRSL NTLRARHLVL SGQALQGSHL SRLQSRGISY GSNKDDEEAE QLSKEISKDW NTVFERSINT LFLTEMVRGL SLTLKYFFDP KVTINYPFEK
101: GPLSPRFRGE HALRRYPTGE ERCIACKLCE AVCPAQAITI EAEEREDGSR RTTRYDIDMT KCIYCGFCQE ACPVDAIVEG PNFEFATETH EELLYDKEKL
201: LENGDRWETE IAENLRSESL YR

Arabidopsis Description

NADH dehydrogenase [ubiquinone] iron-sulfur protein 8-A, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q42599]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.