Factsheet for PGSC0003DMT400084285

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 8

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g051350.1.1	Tomato	mitochondrion	99.13	99.13
PGSC0003DMT400001914	Potato	mitochondrion	96.94	96.94
KRH21490	Soybean	mitochondrion	85.59	88.29
KRH10832	Soybean	mitochondrion	85.15	87.84
GSMUA_Achr5P02040_001	Banana	mitochondrion	53.71	87.23
VIT_03s0063g02550.t01	Wine grape	mitochondrion	84.28	86.55
AT1G79010.1	Thale cress	mitochondrion	82.1	84.68
CDY40039	Canola	mitochondrion	80.79	84.47
CDX88498	Canola	mitochondrion	81.66	84.23
CDY57950	Canola	mitochondrion	81.22	83.78
CDX87415	Canola	mitochondrion	81.22	83.78
Bra035083.1-P	Field mustard	mitochondrion	81.22	83.78
Bra003627.1-P	Field mustard	mitochondrion	81.22	83.78
AT1G16700.1	Thale cress	mitochondrion	80.35	82.88
Zm00001d034244_P001	Maize	extracellular, plasma membrane	80.35	82.51
TraesCS5D01G418000.1	Wheat	mitochondrion	80.35	82.51
TraesCS5B01G413000.1	Wheat	golgi	80.35	82.51
TraesCS5A01G408100.1	Wheat	plastid	80.35	82.51
CDY35112	Canola	mitochondrion	79.91	82.43
GSMUA_Achr2P13190_001	Banana	mitochondrion	78.6	82.19
Zm00001d013156_P001	Maize	mitochondrion	79.91	82.06
KRH60378	Soybean	extracellular	78.17	80.63
KXG37457	Sorghum	mitochondrion	79.48	72.51
HORVU5Hr1G098910.3	Barley	plastid	69.87	54.05

Protein Annotations

EntrezGene:102589342	MapMan:2.4.1.2.4	Gene3D:3.30.70.3270	InterPro:4Fe4S_Fe-S-bd	InterPro:4Fe4S_Fe_S_CS	ProteinID:CAA59062
ProteinID:CAA59062.1	ProteinID:CAA59063	ProteinID:CAA59063.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0003954
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0005743	GO:GO:0008137	GO:GO:0008150	GO:GO:0008152	GO:GO:0016020	GO:GO:0016491
GO:GO:0016651	GO:GO:0046872	GO:GO:0051536	GO:GO:0051539	GO:GO:0055114	GO:GO:0070469
InterPro:IPR017896	HAMAP:MF_01351	InterPro:NADH_quinone_OxRdtase_chainI	RefSeq:NP_001275214.1	UniProt:P80269	PFAM:PF12838
EnsemblPlantsGene:PGSC0003DMG400033912	PGSC:PGSC0003DMG400033912	EnsemblPlants:PGSC0003DMT400084285	ScanProsite:PS00198	PFscan:PS51379	PANTHER:PTHR10849
PANTHER:PTHR10849:SF20	SUPFAM:SSF54862	TIGRFAMs:TIGR01971	UniParc:UPI000013094E	EMBL:X84319	EMBL:X84320
SEG:seg	:	:	:	:	:

Description

NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P80269]

Coordinates

chr10:-:44065202..44069853

Molecular Weight (calculated)

26379.3 Da

IEP (calculated)

5.277

GRAVY (calculated)

-0.542

Length

229 amino acids

Sequence
(BLAST)

001: MAAILARKSL SALRSRQLVL AGHTIEGTNG YNRTLLGTRS FATKHSFSTD KDDEEREQLA KELSKDWNSV FERSINTLFL TEMVRGLMLT LKYFFEKKVT
101: INYPFEKGPL SPRFRGEHAL RRYATGEERC IACKLCEAIC PAQAITIEAE EREDGSRRTT RYDIDMTKCI YCGFCQEACP VDAIVEGPNF EFATETHEEL
201: LYDKEKLLEN GDRWETEIAE NLRSESLYR

Best Arabidopsis Sequence Match ( AT1G79010.1 )
(BLAST)

001: MASILARRSL NTLRARHLVL SGQALQGSHL SRLQSRGISY GSNKDDEEAE QLSKEISKDW NTVFERSINT LFLTEMVRGL SLTLKYFFDP KVTINYPFEK
101: GPLSPRFRGE HALRRYPTGE ERCIACKLCE AVCPAQAITI EAEEREDGSR RTTRYDIDMT KCIYCGFCQE ACPVDAIVEG PNFEFATETH EELLYDKEKL
201: LENGDRWETE IAENLRSESL YR

Arabidopsis Description

NADH dehydrogenase [ubiquinone] iron-sulfur protein 8-A, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q42599]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.