Factsheet for TraesCS5A01G408100.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

mitochondrion 6
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

plastid: 22160430

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G418000.1	Wheat	mitochondrion	99.55	99.55
TraesCS5B01G413000.1	Wheat	golgi	99.55	99.55
Zm00001d013156_P001	Maize	mitochondrion	92.83	92.83
Zm00001d034244_P001	Maize	extracellular, plasma membrane	91.93	91.93
GSMUA_Achr5P02040_001	Banana	mitochondrion	55.16	87.23
KRH10832	Soybean	mitochondrion	82.51	82.88
KRH21490	Soybean	mitochondrion	82.06	82.43
GSMUA_Achr2P13190_001	Banana	mitochondrion	80.72	82.19
KXG37457	Sorghum	mitochondrion	92.38	82.07
CDY40039	Canola	mitochondrion	80.27	81.74
AT1G16700.1	Thale cress	mitochondrion	80.27	80.63
PGSC0003DMT400084285	Potato	mitochondrion	82.51	80.35
CDY35112	Canola	mitochondrion	79.82	80.18
CDX88498	Canola	mitochondrion	79.82	80.18
Solyc10g051350.1.1	Tomato	mitochondrion	82.06	79.91
CDY57950	Canola	mitochondrion	79.37	79.73
Bra003627.1-P	Field mustard	mitochondrion	79.37	79.73
Bra035083.1-P	Field mustard	mitochondrion	79.37	79.73
CDX87415	Canola	mitochondrion	79.37	79.73
Solyc01g109620.2.1	Tomato	plastid	81.61	79.48
PGSC0003DMT400001914	Potato	mitochondrion	81.61	79.48
AT1G79010.1	Thale cress	mitochondrion	78.48	78.83
VIT_03s0063g02550.t01	Wine grape	mitochondrion	78.48	78.48
KRH60378	Soybean	extracellular	77.58	77.93
HORVU5Hr1G098910.3	Barley	plastid	84.3	63.51
TraesCS3A01G430200.1	Wheat	mitochondrion	19.28	23.76
TraesCS4A01G141300.1	Wheat	cytosol, extracellular, mitochondrion	19.28	23.63

Protein Annotations

MapMan:2.4.1.2.4	Gene3D:3.30.70.3270	InterPro:4Fe4S_Fe-S-bd	InterPro:4Fe4S_Fe_S_CS	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005575	GO:GO:0008150	GO:GO:0008152	GO:GO:0016020	GO:GO:0016651
GO:GO:0051539	GO:GO:0055114	InterPro:IPR017896	HAMAP:MF_01351	InterPro:NADH_quinone_OxRdtase_chainI	PFAM:PF12838
ScanProsite:PS00198	PFscan:PS51379	PANTHER:PTHR10849	PANTHER:PTHR10849:SF20	SUPFAM:SSF54862	TIGRFAMs:TIGR01971
EnsemblPlantsGene:TraesCS5A01G408100	EnsemblPlants:TraesCS5A01G408100.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr5A:-:598531987..598535227

Molecular Weight (calculated)

25659.6 Da

IEP (calculated)

5.120

GRAVY (calculated)

-0.532

Length

223 amino acids

Sequence
(BLAST)

001: MAALLARQAA MALRARQTAR LGPSATAMQG HLRTYMDAGA PKRFKEDEEK EQLAKELAKD WSAVFERSIN TLFLTEMVRG LMLTLKYFFE RKVTINYPFE
101: KGPLSPRFRG EHALRRYDTG EERCIACKLC EAICPAQAIT IEAEEREDGS RRTTRYDIDM TKCIYCGFCQ EACPVDAIVE GPNFEFSTET HEELLYDKEK
201: LLENGDRWET EIAENLKSEA LYR

Best Arabidopsis Sequence Match ( AT1G79010.1 )
(BLAST)

001: MASILARRSL NTLRARHLVL SGQALQGSHL SRLQSRGISY GSNKDDEEAE QLSKEISKDW NTVFERSINT LFLTEMVRGL SLTLKYFFDP KVTINYPFEK
101: GPLSPRFRGE HALRRYPTGE ERCIACKLCE AVCPAQAITI EAEEREDGSR RTTRYDIDMT KCIYCGFCQE ACPVDAIVEG PNFEFATETH EELLYDKEKL
201: LENGDRWETE IAENLRSESL YR

Arabidopsis Description

NADH dehydrogenase [ubiquinone] iron-sulfur protein 8-A, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q42599]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.