Factsheet for TraesCS4A01G141300.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, extracellular, cytosol

Predictor Summary:

plastid 1
cytosol 1
extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular, mitochondrion
Any Predictor:	cytosol, extracellular, mitochondrion
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	extracellular
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra041055.1-P	Field mustard	mitochondrion	89.01	94.19
HORVU3Hr1G066350.1	Barley	mitochondrion	92.86	93.89
TraesCS3B01G189100.1	Wheat	mitochondrion	91.76	91.76
TraesCS3A01G430200.1	Wheat	mitochondrion	90.66	91.16
CAA33909	Rice	mitochondrion	86.81	88.76
TraesCS4D01G162200.1	Wheat	mitochondrion	86.81	87.78
GRMZM5G866223_P01	Maize	plastid	86.81	87.78
GSMUA_AchrUn_...	Banana	mitochondrion	53.85	80.33
CDY21197	Canola	mitochondrion, plastid	68.13	74.25
CDY19662	Canola	mitochondrion	68.13	74.25
CDY03035	Canola	mitochondrion	68.13	74.25
CDX95228	Canola	mitochondrion	68.13	74.25
ATCG01090.1	Thale cress	mitochondrion	68.13	72.09
OQU91689	Sorghum	extracellular	32.42	71.95
KRG99584	Soybean	mitochondrion	32.97	65.22
Solyc01g086880.1.1	Tomato	extracellular	30.77	41.79
TraesCS5A01G408100.1	Wheat	plastid	23.63	19.28

Protein Annotations

MapMan:1.1.8.1.2.2	Gene3D:3.30.70.3270	InterPro:4Fe4S_Fe-S-bd	InterPro:4Fe4S_Fe_S_CS	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005575	GO:GO:0008137	GO:GO:0008150	GO:GO:0008152	GO:GO:0016020
GO:GO:0016651	GO:GO:0051539	GO:GO:0055114	InterPro:IPR017896	InterPro:NADH_plast_OxRdtase_su_I	InterPro:NADH_quinone_OxRdtase_chainI
PFAM:PF13187	ScanProsite:PS00198	PFscan:PS51379	PANTHER:PTHR10849	PANTHER:PTHR10849:SF23	SUPFAM:SSF54862
TIGRFAMs:TIGR00403	TIGRFAMs:TIGR01971	EnsemblPlantsGene:TraesCS4A01G141300	EnsemblPlants:TraesCS4A01G141300.1	SEG:seg	:

Description

No Description!

Coordinates

chr4A:-:219339133..219339681

Molecular Weight (calculated)

21187.4 Da

IEP (calculated)

6.699

GRAVY (calculated)

-0.224

Length

182 amino acids

Sequence
(BLAST)

001: MNMFPMVTGF MSYGQQTIHA TMYIGQSFIT TLSHTNHLPI TIHYPYEKSI TPERFRGRIH FEFDKCIACE VCVHVCSIGL PVVDWRFEKD IKRKQLLNYS
101: IDFGVCIFCG NCVEYCPTSY LSMTEEYEVS TYDHHELNYN QIALSRLPIS IMGDYTIQTI RNLSESKINK EKSSNSRTIT DY

Best Arabidopsis Sequence Match ( ATCG01090.1 )
(BLAST)

001: MLPMITGFMN YGQQTLRAAR YIGQGFMITL SHTNRLPVTI QYPYEKLITS ERFRGRIHFE FDKCIACEVC VRVCPIDLPV VDWKLETNIR KKRLLNYSID
101: FGICIFCGNC VEYCPTNCLS MTEEYEFSTY DRHELNYNQI ALGRLPMSVI DDYTIRTIWN SPQTKNGVNP LI

Arabidopsis Description

NDHINAD(P)H-quinone oxidoreductase subunit I, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P56755]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.