CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 2
mitochondrion 5

Predictors

GFP

MS/MS

Papers

plastid: 21417358

msms PMID: 21417358 doi

DR Demartini, R Jain, G Agrawal, JJ Thelen

Department of Biochemistry and Interdisciplinary Plant Group, Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, Missouri 65211, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY19662	Canola	mitochondrion	100.0	100.0
CDX95228	Canola	mitochondrion	100.0	100.0
CDY03035	Canola	mitochondrion	100.0	100.0
ATCG01090.1	Thale cress	mitochondrion	99.4	96.51
Solyc11g021220.1.1	Tomato	plastid	87.43	87.43
GSMUA_AchrUn_...	Banana	mitochondrion	61.08	83.61
HORVU2Hr1G021310.1	Barley	cytosol, mitochondrion	37.72	80.77
TraesCS1B01G105900.1	Wheat	mitochondrion	25.15	79.25
CAA33909	Rice	mitochondrion	80.84	75.84
GRMZM5G866223_P01	Maize	plastid	81.44	75.56
TraesCS5B01G250600.1	Wheat	mitochondrion	55.69	74.4
AGP50809	Barley	plastid	79.64	73.89
HORVU1Hr1G048100.1	Barley	mitochondrion	79.64	73.89
HORVU7Hr1G107870.1	Barley	mitochondrion	79.64	73.89
HORVU3Hr1G066350.1	Barley	mitochondrion	79.64	73.89
Bra041055.1-P	Field mustard	mitochondrion	76.05	73.84
HORVU5Hr1G064760.1	Barley	mitochondrion	79.04	73.33
OQU91689	Sorghum	extracellular	35.93	73.17
TraesCS2D01G243500.1	Wheat	plastid	79.04	72.53
TraesCSU01G221700.1	Wheat	mitochondrion	79.04	72.53
TraesCS3A01G430200.1	Wheat	mitochondrion	77.84	71.82
TraesCS1B01G405600.1	Wheat	mitochondrion	76.65	71.11
TraesCS3B01G189100.1	Wheat	mitochondrion	77.25	70.88
TraesCS4A01G141300.1	Wheat	cytosol, extracellular, mitochondrion	74.25	68.13
TraesCS4D01G162200.1	Wheat	mitochondrion	71.86	66.67
TraesCS7B01G395600.1	Wheat	mitochondrion	43.71	66.36
HORVU0Hr1G025040.1	Barley	mitochondrion	44.91	61.48
HORVU5Hr1G005450.1	Barley	cytosol	13.17	59.46
HORVU2Hr1G030360.1	Barley	cytosol	38.32	57.14
HORVU6Hr1G087860.1	Barley	mitochondrion	56.29	52.22
CDY40039	Canola	mitochondrion	26.95	20.55
CDY57950	Canola	mitochondrion	26.95	20.27
CDY35112	Canola	mitochondrion	26.95	20.27
CDX88498	Canola	mitochondrion	26.95	20.27
CDX87415	Canola	mitochondrion	26.95	20.27

Protein Annotations

MapMan:1.1.8.1.2.2	Gene3D:3.30.70.3270	InterPro:4Fe4S_Fe-S-bd	InterPro:4Fe4S_Fe_S_CS	ProteinID:ACY66261.1	ProteinID:AIK29059.1
ProteinID:AIZ06135.1	ProteinID:AKD00144.1	ProteinID:ASY95069.1	ProteinID:CDY19662.1	EnsemblPlants:CDY21197	ProteinID:CDY21197
ProteinID:CDY21197.1	GO:D1L8U3	UniProt:D1L8U3	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005506	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005886
GO:GO:0008137	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009535	GO:GO:0009536
GO:GO:0009579	GO:GO:0016020	GO:GO:0016491	GO:GO:0016651	GO:GO:0046872	GO:GO:0048038
GO:GO:0050136	GO:GO:0051536	GO:GO:0051539	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00015404001	InterPro:IPR017896
HAMAP:MF_01351	InterPro:NADH_plast_OxRdtase_su_I	InterPro:NADH_quinone_OxRdtase_chainI	PFAM:PF13187	ScanProsite:PS00198	PFscan:PS51379
PANTHER:PTHR10849	PANTHER:PTHR10849:SF23	SUPFAM:SSF54862	TIGRFAMs:TIGR00403	TIGRFAMs:TIGR01971	UniParc:UPI0001BBFFB0

Description

BnaA01g34280DNADH-quinone oxidoreductase subunit I [Source:UniProtKB/TrEMBL;Acc:D1L8U3]

Coordinates

chrLK032116:+:499680..500183

Molecular Weight (calculated)

19477.7 Da

IEP (calculated)

7.632

GRAVY (calculated)

-0.151

Length

167 amino acids

Sequence
(BLAST)

001: MLPMITGFMN YGQQTLRAAR YIGQGFMITL SHTNRLPVTI QYPYEKLITS ERFRGRIHFE FDKCIACEVC VRVCPIDLPV VDWKLETNIR KKRLLNYSID
101: FGICIFCGNC VEYCPTNCLS MTEEYEFSTY DRHELNYNQI ALGRLPMSVI DDYTIRTILN SPQTKNG

Best Arabidopsis Sequence Match ( ATCG01090.1 )
(BLAST)

001: MLPMITGFMN YGQQTLRAAR YIGQGFMITL SHTNRLPVTI QYPYEKLITS ERFRGRIHFE FDKCIACEVC VRVCPIDLPV VDWKLETNIR KKRLLNYSID
101: FGICIFCGNC VEYCPTNCLS MTEEYEFSTY DRHELNYNQI ALGRLPMSVI DDYTIRTIWN SPQTKNGVNP LI

Arabidopsis Description

NDHINAD(P)H-quinone oxidoreductase subunit I, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P56755]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.