Factsheet for TraesCS4D01G162200.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 6
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra041055.1-P	Field mustard	mitochondrion	87.78	91.86
HORVU3Hr1G066350.1	Barley	mitochondrion	91.11	91.11
TraesCS2D01G243500.1	Wheat	plastid	90.56	89.56
TraesCS3B01G189100.1	Wheat	mitochondrion	90.56	89.56
TraesCS3A01G430200.1	Wheat	mitochondrion	87.78	87.29
TraesCS4A01G141300.1	Wheat	cytosol, extracellular, mitochondrion	87.78	86.81
CAA33909	Rice	mitochondrion	85.56	86.52
GRMZM5G866223_P01	Maize	plastid	85.56	85.56
GSMUA_AchrUn_...	Banana	mitochondrion	53.89	79.51
OQU91689	Sorghum	extracellular	33.33	73.17
CDX95228	Canola	mitochondrion	66.67	71.86
CDY03035	Canola	mitochondrion	66.67	71.86
CDY19662	Canola	mitochondrion	66.67	71.86
CDY21197	Canola	mitochondrion, plastid	66.67	71.86
ATCG01090.1	Thale cress	mitochondrion	66.67	69.77
KRG99584	Soybean	mitochondrion	33.33	65.22
Solyc01g086880.1.1	Tomato	extracellular	31.67	42.54
TraesCS5D01G418000.1	Wheat	mitochondrion	23.33	18.83

Protein Annotations

MapMan:1.1.8.1.2.2	Gene3D:3.30.70.3270	InterPro:4Fe4S_Fe-S-bd	InterPro:4Fe4S_Fe_S_CS	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005575	GO:GO:0008137	GO:GO:0008150	GO:GO:0008152	GO:GO:0016020
GO:GO:0016651	GO:GO:0051539	GO:GO:0055114	InterPro:IPR017896	InterPro:NADH_plast_OxRdtase_su_I	InterPro:NADH_quinone_OxRdtase_chainI
PFAM:PF00037	ScanProsite:PS00198	PFscan:PS51379	PANTHER:PTHR10849	PANTHER:PTHR10849:SF23	SUPFAM:SSF54862
TIGRFAMs:TIGR00403	TIGRFAMs:TIGR01971	EnsemblPlantsGene:TraesCS4D01G162200	EnsemblPlants:TraesCS4D01G162200.1	SEG:seg	:

Description

No Description!

Coordinates

chr4D:+:245648878..245649420

Molecular Weight (calculated)

21154.4 Da

IEP (calculated)

7.896

GRAVY (calculated)

-0.256

Length

180 amino acids

Sequence
(BLAST)

001: MFPVVTGFMS YGQRTIRATR YVGQCLITTL SHTNRLHITI HYPYEKSITP ERFRGRIHFE FDNCIACEVC VHVCLIDLPI VDWRFEKDIK RKQLLNYSID
101: FRVCIFCGNC VEYCPTSCLS MTEKYELSTY DRHELNYNQI AVSWLPLSIM GDYTIQTIRN SSESKINKEK SSNSRTITDY

Best Arabidopsis Sequence Match ( ATCG01090.1 )
(BLAST)

001: MLPMITGFMN YGQQTLRAAR YIGQGFMITL SHTNRLPVTI QYPYEKLITS ERFRGRIHFE FDKCIACEVC VRVCPIDLPV VDWKLETNIR KKRLLNYSID
101: FGICIFCGNC VEYCPTNCLS MTEEYEFSTY DRHELNYNQI ALGRLPMSVI DDYTIRTIWN SPQTKNGVNP LI

Arabidopsis Description

NDHINAD(P)H-quinone oxidoreductase subunit I, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P56755]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.