Factsheet for GRMZM5G866223_P01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

plastid: 18453340
plastid: 20089766
plastid: 21196305
plastid: 22065420
plastid: 23198870

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 18453340 doi

W Majeran, B Zybailov, AJ Ytterberg, J Dunsmore, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 21196305

XY Liu, YD Wu, ZY Shen, Z Shen, HH Li, XM Yu, XF Yan, CH Guo, BC Wang

Key Laboratory of Forest Tree Genetic Improvement and Biotechnology, Ministry of Education, Northeast Forestry University, Harbin, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CAA33909	Rice	mitochondrion	97.22	98.31
HORVU1Hr1G048100.1	Barley	mitochondrion	93.89	93.89
HORVU3Hr1G066350.1	Barley	mitochondrion	93.89	93.89
AGP50809	Barley	plastid	93.89	93.89
HORVU7Hr1G107870.1	Barley	mitochondrion	93.89	93.89
Bra041055.1-P	Field mustard	mitochondrion	89.44	93.6
HORVU5Hr1G064760.1	Barley	mitochondrion	92.78	92.78
TraesCS2D01G243500.1	Wheat	plastid	91.67	90.66
TraesCSU01G221700.1	Wheat	mitochondrion	91.67	90.66
TraesCS3A01G430200.1	Wheat	mitochondrion	90.56	90.06
TraesCS1B01G405600.1	Wheat	mitochondrion	90.0	90.0
TraesCS3B01G189100.1	Wheat	mitochondrion	90.56	89.56
GSMUA_AchrUn_...	Banana	mitochondrion	58.89	86.89
TraesCS4A01G141300.1	Wheat	cytosol, extracellular, mitochondrion	87.78	86.81
TraesCS4D01G162200.1	Wheat	mitochondrion	85.56	85.56
OQU91689	Sorghum	extracellular	37.22	81.71
CDY21197	Canola	mitochondrion, plastid	75.56	81.44
CDY19662	Canola	mitochondrion	75.56	81.44
CDY03035	Canola	mitochondrion	75.56	81.44
CDX95228	Canola	mitochondrion	75.56	81.44
ATCG01090.1	Thale cress	mitochondrion	75.56	79.07
KRG99584	Soybean	mitochondrion	38.33	75.0
HORVU2Hr1G030360.1	Barley	cytosol	46.67	75.0
HORVU6Hr1G087860.1	Barley	mitochondrion	65.56	65.56
Solyc01g086880.1.1	Tomato	extracellular	32.78	44.03
Zm00001d013156_P001	Maize	mitochondrion	22.78	18.39
Zm00001d034244_P001	Maize	extracellular, plasma membrane	22.78	18.39

Protein Annotations

MapMan:1.1.8.1.2.2	Gene3D:3.30.70.3270	InterPro:4Fe4S_Fe-S-bd	InterPro:4Fe4S_Fe_S_CS	EntrezGene:845188	ProteinID:CAA60352.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005506	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005886	GO:GO:0006091	GO:GO:0008137	GO:GO:0008150
GO:GO:0008152	GO:GO:0009507	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009987
GO:GO:0015979	GO:GO:0016020	GO:GO:0016491	GO:GO:0016651	GO:GO:0016655	GO:GO:0019684
GO:GO:0046872	GO:GO:0048038	GO:GO:0050136	GO:GO:0051536	GO:GO:0051539	GO:GO:0055114
EnsemblPlantsGene:GRMZM5G866223	EnsemblPlants:GRMZM5G866223_P01	EnsemblPlants:GRMZM5G866223_T01	InterPro:IPR017896	HAMAP:MF_01351	InterPro:NADH_plast_OxRdtase_su_I
InterPro:NADH_quinone_OxRdtase_chainI	UniProt:P46722	PFAM:PF13237	ScanProsite:PS00198	PFscan:PS51379	PANTHER:PTHR10849
PANTHER:PTHR10849:SF23	SUPFAM:SSF54862	TIGRFAMs:TIGR00403	TIGRFAMs:TIGR01971	UniParc:UPI0000130941	:

Description

ndhINAD(P)H-quinone oxidoreductase subunit I, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P46722]

Coordinates

chrPt:-:113707..114249

Molecular Weight (calculated)

21158.4 Da

IEP (calculated)

6.868

GRAVY (calculated)

-0.271

Length

180 amino acids

Sequence
(BLAST)

001: MFPMLTGFIS YGQQTIRAAR YIGQSFIITL SHTNRLPITI HYPYEKSITS ERFRGRIHFE FDKCIACEVC VRVCPIDLPL VDWRFEKDIK RKQLLNYSID
101: FGVCIFCGNC VEYCPTNCLS MTEEYELSTY DRHELNYNQI ALSRLPISIM GDYTIQTIRN SPQSKIDEEK SWNSRTITDY

Best Arabidopsis Sequence Match ( ATCG01090.1 )
(BLAST)

001: MLPMITGFMN YGQQTLRAAR YIGQGFMITL SHTNRLPVTI QYPYEKLITS ERFRGRIHFE FDKCIACEVC VRVCPIDLPV VDWKLETNIR KKRLLNYSID
101: FGICIFCGNC VEYCPTNCLS MTEEYEFSTY DRHELNYNQI ALGRLPMSVI DDYTIRTIWN SPQTKNGVNP LI

Arabidopsis Description

NDHINAD(P)H-quinone oxidoreductase subunit I, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P56755]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.