Factsheet for Bra041055.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 4
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AGP50809	Barley	plastid	99.42	95.0
HORVU7Hr1G107870.1	Barley	mitochondrion	99.42	95.0
HORVU3Hr1G066350.1	Barley	mitochondrion	99.42	95.0
HORVU1Hr1G048100.1	Barley	mitochondrion	99.42	95.0
HORVU5Hr1G064760.1	Barley	mitochondrion	98.26	93.89
TraesCSU01G221700.1	Wheat	mitochondrion	98.26	92.86
TraesCS2D01G243500.1	Wheat	plastid	98.26	92.86
TraesCS3B01G189100.1	Wheat	mitochondrion	97.67	92.31
TraesCS3A01G430200.1	Wheat	mitochondrion	95.93	91.16
TraesCS1B01G405600.1	Wheat	mitochondrion	95.35	91.11
CAA33909	Rice	mitochondrion	93.02	89.89
GRMZM5G866223_P01	Maize	plastid	93.6	89.44
TraesCS4A01G141300.1	Wheat	cytosol, extracellular, mitochondrion	94.19	89.01
TraesCS4D01G162200.1	Wheat	mitochondrion	91.86	87.78
GSMUA_AchrUn_...	Banana	mitochondrion	55.81	78.69
HORVU2Hr1G030360.1	Barley	cytosol	50.58	77.68
CDY21197	Canola	mitochondrion, plastid	73.84	76.05
CDY03035	Canola	mitochondrion	73.84	76.05
CDX95228	Canola	mitochondrion	73.84	76.05
CDY19662	Canola	mitochondrion	73.84	76.05
OQU91689	Sorghum	extracellular	36.05	75.61
ATCG01090.1	Thale cress	mitochondrion	73.84	73.84
KRG99584	Soybean	mitochondrion	35.47	66.3
HORVU6Hr1G087860.1	Barley	mitochondrion	68.02	65.0
Solyc01g086880.1.1	Tomato	extracellular	34.88	44.78
Bra003627.1-P	Field mustard	mitochondrion	23.84	18.47
Bra035083.1-P	Field mustard	mitochondrion	23.84	18.47

Protein Annotations

MapMan:1.1.8.1.2.2	Gene3D:3.30.70.3270	InterPro:4Fe4S_Fe-S-bd	InterPro:4Fe4S_Fe_S_CS	EnsemblPlantsGene:Bra041055	EnsemblPlants:Bra041055.1
EnsemblPlants:Bra041055.1-P	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0008137	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507
GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0016020	GO:GO:0016491	GO:GO:0016651
GO:GO:0046872	GO:GO:0051536	GO:GO:0051539	GO:GO:0055114	InterPro:IPR017896	UniProt:M4FIX6
HAMAP:MF_01351	InterPro:NADH_plast_OxRdtase_su_I	InterPro:NADH_quinone_OxRdtase_chainI	PFAM:PF13237	ScanProsite:PS00198	PFscan:PS51379
PANTHER:PTHR10849	PANTHER:PTHR10849:SF23	SUPFAM:SSF54862	TIGRFAMs:TIGR00403	TIGRFAMs:TIGR01971	UniParc:UPI000253EC35
SEG:seg	:	:	:	:	:

Description

ATCG01090 (E=2e-075) NDHI | Encodes subunit of the chloroplast NAD(P)H dehydrogenase complex

Coordinates

chrScaffold000424:-:5598..6116

Molecular Weight (calculated)

20128.0 Da

IEP (calculated)

7.653

GRAVY (calculated)

-0.388

Length

172 amino acids

Sequence
(BLAST)

001: MSYGQQTIRA TRYIGQSFIT TLSHTNRLPI TIHYPYEKSI TPERFRGRIH FEFDKCIACE VCVRVCPIDL PVVDWRFEKD IKRKQLLNYS IDFGVCIFCG
101: NCVEYCPTSC LSMTEEYELS TYDRHELNYN QIALSRLPIS IMGDYTIQTI RNSSESKINK EKSSNSRTIT DY

Best Arabidopsis Sequence Match ( ATCG01090.1 )
(BLAST)

001: MLPMITGFMN YGQQTLRAAR YIGQGFMITL SHTNRLPVTI QYPYEKLITS ERFRGRIHFE FDKCIACEVC VRVCPIDLPV VDWKLETNIR KKRLLNYSID
101: FGICIFCGNC VEYCPTNCLS MTEEYEFSTY DRHELNYNQI ALGRLPMSVI DDYTIRTIWN SPQTKNGVNP LI

Arabidopsis Description

NDHINAD(P)H-quinone oxidoreductase subunit I, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P56755]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.