CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 4

Predictors

GFP

MS/MS

Papers

plastid: 21440687

msms PMID: 21440687 doi

M Plöscher, V Reisinger, LA Eichacker

TRION Pharma GmbH, Munich, Germany.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU7Hr1G107870.1	Barley	mitochondrion	100.0	100.0
HORVU3Hr1G066350.1	Barley	mitochondrion	100.0	100.0
HORVU1Hr1G048100.1	Barley	mitochondrion	100.0	100.0
Bra041055.1-P	Field mustard	mitochondrion	95.0	99.42
HORVU5Hr1G064760.1	Barley	mitochondrion	98.89	98.89
HORVU2Hr1G021310.1	Barley	cytosol, mitochondrion	42.78	98.72
TraesCSU01G221700.1	Wheat	mitochondrion	97.78	96.7
TraesCS2D01G243500.1	Wheat	plastid	97.78	96.7
CAA33909	Rice	mitochondrion	93.89	94.94
GRMZM5G866223_P01	Maize	plastid	93.89	93.89
GSMUA_AchrUn_...	Banana	mitochondrion	57.78	85.25
CDY19662	Canola	mitochondrion	73.89	79.64
CDY03035	Canola	mitochondrion	73.89	79.64
CDX95228	Canola	mitochondrion	73.89	79.64
CDY21197	Canola	mitochondrion, plastid	73.89	79.64
HORVU2Hr1G030360.1	Barley	cytosol	48.33	77.68
ATCG01090.1	Thale cress	mitochondrion	73.89	77.33
OQU91689	Sorghum	extracellular	35.0	76.83
HORVU0Hr1G025040.1	Barley	mitochondrion	50.56	74.59
KRG99584	Soybean	mitochondrion	36.67	71.74
HORVU6Hr1G087860.1	Barley	mitochondrion	69.44	69.44
HORVU5Hr1G005450.1	Barley	cytosol	13.33	64.86
HORVU5Hr1G098910.3	Barley	plastid	23.33	14.19

Protein Annotations

MapMan:1.1.8.1.2.2	Gene3D:3.30.70.3270	EntrezGene:4525171	InterPro:4Fe4S_Fe-S-bd	InterPro:4Fe4S_Fe_S_CS	EnsemblPlants:AGP50809
EnsemblPlantsGene:AGP50809	ProteinID:AGP50809	ProteinID:AGP50809.1	ProteinID:AMA20300.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005506	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006091	GO:GO:0008137	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009535
GO:GO:0009536	GO:GO:0009579	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020	GO:GO:0016491
GO:GO:0016651	GO:GO:0016655	GO:GO:0019684	GO:GO:0046872	GO:GO:0048038	GO:GO:0051536
GO:GO:0051539	GO:GO:0055114	InterPro:IPR017896	ENA:KC912687.1:CDS:complement(111136..111678)	HAMAP:MF_01351	InterPro:NADH_plast_OxRdtase_su_I
InterPro:NADH_quinone_OxRdtase_chainI	PFAM:PF13237	ScanProsite:PS00198	PFscan:PS51379	PANTHER:PTHR10849	PANTHER:PTHR10849:SF23
GO:S4YYQ6	UniProt:S4YYQ6	SUPFAM:SSF54862	TIGRFAMs:TIGR00403	TIGRFAMs:TIGR01971	UniParc:UPI0000E8A8A6
RefSeq:YP_874706.1	SEG:seg	:	:	:	:

Description

ndhINADH-plastoquinone oxidoreductase subunit I

Coordinates

chrPt:-:111136..111678

Molecular Weight (calculated)

21040.2 Da

IEP (calculated)

6.868

GRAVY (calculated)

-0.308

Length

180 amino acids

Sequence
(BLAST)

001: MFPMVTGFMS YGQQTIRATR YIGQSFITTL SHTNRLPITI HYPYEKSITP ERFRGRIHFE FDKCIACEVC VRVCPIDLPV VDWRFEKDIK RKQLLNYSID
101: FGVCIFCGNC VEYCPTSCLS MTEEYELSTY DRHELNYNQI ALSRLPISIM GDYTIQTIRN SSESKINEEK SSNSRTITDY

Best Arabidopsis Sequence Match ( ATCG01090.1 )
(BLAST)

001: MLPMITGFMN YGQQTLRAAR YIGQGFMITL SHTNRLPVTI QYPYEKLITS ERFRGRIHFE FDKCIACEVC VRVCPIDLPV VDWKLETNIR KKRLLNYSID
101: FGICIFCGNC VEYCPTNCLS MTEEYEFSTY DRHELNYNQI ALGRLPMSVI DDYTIRTIWN SPQTKNGVNP LI

Arabidopsis Description

NDHINAD(P)H-quinone oxidoreductase subunit I, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P56755]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.