CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GRMZM5G866223_P01	Maize	plastid	98.31	97.22
AGP50809	Barley	plastid	94.94	93.89
HORVU7Hr1G107870.1	Barley	mitochondrion	94.94	93.89
HORVU3Hr1G066350.1	Barley	mitochondrion	94.94	93.89
HORVU1Hr1G048100.1	Barley	mitochondrion	94.94	93.89
Bra041055.1-P	Field mustard	mitochondrion	89.89	93.02
HORVU5Hr1G064760.1	Barley	mitochondrion	93.82	92.78
TraesCSU01G221700.1	Wheat	mitochondrion	92.7	90.66
TraesCS2D01G243500.1	Wheat	plastid	92.7	90.66
TraesCS3A01G430200.1	Wheat	mitochondrion	91.57	90.06
TraesCS1B01G405600.1	Wheat	mitochondrion	91.01	90.0
TraesCS3B01G189100.1	Wheat	mitochondrion	91.57	89.56
GSMUA_AchrUn_...	Banana	mitochondrion	60.11	87.7
TraesCS4A01G141300.1	Wheat	cytosol, extracellular, mitochondrion	88.76	86.81
TraesCS4D01G162200.1	Wheat	mitochondrion	86.52	85.56
CDY21197	Canola	mitochondrion, plastid	75.84	80.84
CDY19662	Canola	mitochondrion	75.84	80.84
CDY03035	Canola	mitochondrion	75.84	80.84
CDX95228	Canola	mitochondrion	75.84	80.84
OQU91689	Sorghum	extracellular	37.08	80.49
ATCG01090.1	Thale cress	mitochondrion	75.84	78.49
HORVU2Hr1G030360.1	Barley	cytosol	47.19	75.0
KRG99584	Soybean	mitochondrion	38.2	73.91
HORVU6Hr1G087860.1	Barley	mitochondrion	66.29	65.56
Solyc01g086880.1.1	Tomato	extracellular	33.15	44.03

Protein Annotations

MapMan:1.1.8.1.2.2	Gene3D:3.30.70.3270	InterPro:4Fe4S_Fe-S-bd	InterPro:4Fe4S_Fe_S_CS	EnsemblPlants:CAA33909	EnsemblPlantsGene:CAA33909
ProteinID:CAA33909	ProteinID:CAA33909.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005506
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0008137
GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579
GO:GO:0009987	GO:GO:0015979	GO:GO:0016020	GO:GO:0016491	GO:GO:0016651	GO:GO:0016655
GO:GO:0019684	GO:GO:0046872	GO:GO:0048038	GO:GO:0051536	GO:GO:0051539	GO:GO:0055114
InterPro:IPR017896	HAMAP:MF_01351	InterPro:NADH_plast_OxRdtase_su_I	InterPro:NADH_quinone_OxRdtase_chainI	PFAM:PF13237	ScanProsite:PS00198
PFscan:PS51379	PANTHER:PTHR10849	PANTHER:PTHR10849:SF23	Reactome:R-HSA-611105	Reactome:R-HSA-6799198	SUPFAM:SSF54862
TIGRFAMs:TIGR00403	TIGRFAMs:TIGR01971	UniParc:UPI0000130944	:	:	:

Description

18kDa protein related to a subunit of NADH dehydroghenase

Coordinates

chrPt:-:110000..110536

Molecular Weight (calculated)

20916.1 Da

IEP (calculated)

6.868

GRAVY (calculated)

-0.270

Length

178 amino acids

Sequence
(BLAST)

001: MFPMVTGFMG QQTIRAARYI GQSFIITLSH TNRLPITIHY PYEKSITSER FRGRIHFEFD KCIACEVCVR VCPIDLPLVD WRFEKDIKRK QLLNYSIDFG
101: VCIFCGNCVE YCPTNCLSMT EEYELSTYDR HELNYNQIAL SRLPISIMGD YTIQTIRNST QSKIDEEKSW NSRTITDY

Best Arabidopsis Sequence Match ( ATCG01090.1 )
(BLAST)

001: MLPMITGFMN YGQQTLRAAR YIGQGFMITL SHTNRLPVTI QYPYEKLITS ERFRGRIHFE FDKCIACEVC VRVCPIDLPV VDWKLETNIR KKRLLNYSID
101: FGICIFCGNC VEYCPTNCLS MTEEYEFSTY DRHELNYNQI ALGRLPMSVI DDYTIRTIWN SPQTKNGVNP LI

Arabidopsis Description

NDHINAD(P)H-quinone oxidoreductase subunit I, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P56755]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.