Factsheet for TraesCS2D01G243500.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
cytosol 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

plastid: 22160430

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCSU01G221700.1	Wheat	mitochondrion	100.0	100.0
Bra041055.1-P	Field mustard	mitochondrion	92.86	98.26
HORVU7Hr1G107870.1	Barley	mitochondrion	96.7	97.78
HORVU1Hr1G048100.1	Barley	mitochondrion	96.7	97.78
AGP50809	Barley	plastid	96.7	97.78
CAA33909	Rice	mitochondrion	90.66	92.7
GRMZM5G866223_P01	Maize	plastid	90.66	91.67
TraesCS4D01G162200.1	Wheat	mitochondrion	89.56	90.56
GSMUA_AchrUn_...	Banana	mitochondrion	55.49	82.79
CDY21197	Canola	mitochondrion, plastid	72.53	79.04
CDY19662	Canola	mitochondrion	72.53	79.04
CDY03035	Canola	mitochondrion	72.53	79.04
CDX95228	Canola	mitochondrion	72.53	79.04
OQU91689	Sorghum	extracellular	34.62	76.83
ATCG01090.1	Thale cress	mitochondrion	72.53	76.74
KRG99584	Soybean	mitochondrion	36.26	71.74
Solyc01g086880.1.1	Tomato	extracellular	32.97	44.78
TraesCS5D01G418000.1	Wheat	mitochondrion	23.08	18.83

Protein Annotations

MapMan:1.1.8.1.2.2	Gene3D:3.30.70.3270	InterPro:4Fe4S_Fe-S-bd	InterPro:4Fe4S_Fe_S_CS	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005575	GO:GO:0008137	GO:GO:0008150	GO:GO:0008152	GO:GO:0016020
GO:GO:0016651	GO:GO:0051539	GO:GO:0055114	InterPro:IPR017896	InterPro:NADH_plast_OxRdtase_su_I	InterPro:NADH_quinone_OxRdtase_chainI
PFAM:PF13237	ScanProsite:PS00198	PFscan:PS51379	PANTHER:PTHR10849	PANTHER:PTHR10849:SF23	SUPFAM:SSF54862
TIGRFAMs:TIGR00403	TIGRFAMs:TIGR01971	EnsemblPlantsGene:TraesCS2D01G243500	EnsemblPlants:TraesCS2D01G243500.1	SEG:seg	:

Description

No Description!

Coordinates

chr2D:-:272800921..272801469

Molecular Weight (calculated)

21453.7 Da

IEP (calculated)

7.307

GRAVY (calculated)

-0.350

Length

182 amino acids

Sequence
(BLAST)

001: MNMFPMVTGF MSYGQQTIRA TRYIGQSFIT TLSHTNRLPI TIHYPYEKSI TPERFRGRIH FEFDKCIACE VCVRVCPIDL PVVDWRFEKD IKRKQLLNYS
101: IDFEICIFCG NCVEYWPTSC LSMTEEYELS TYDRHELNYN QIALSRLPIS IMGDYTIQTI RNSSESKINK EKSSNSRTIT DY

Best Arabidopsis Sequence Match ( ATCG01090.1 )
(BLAST)

001: MLPMITGFMN YGQQTLRAAR YIGQGFMITL SHTNRLPVTI QYPYEKLITS ERFRGRIHFE FDKCIACEVC VRVCPIDLPV VDWKLETNIR KKRLLNYSID
101: FGICIFCGNC VEYCPTNCLS MTEEYEFSTY DRHELNYNQI ALGRLPMSVI DDYTIRTIWN SPQTKNGVNP LI

Arabidopsis Description

NDHINAD(P)H-quinone oxidoreductase subunit I, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P56755]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.