Factsheet for Bra035083.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 8

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX87415	Canola	mitochondrion	100.0	100.0
CDX88498	Canola	mitochondrion	99.55	99.55
Bra003627.1-P	Field mustard	mitochondrion	97.75	97.75
AT1G79010.1	Thale cress	mitochondrion	96.4	96.4
GSMUA_Achr5P02040_001	Banana	mitochondrion	54.5	85.82
KRH10832	Soybean	mitochondrion	85.59	85.59
KRH21490	Soybean	mitochondrion	84.68	84.68
VIT_03s0063g02550.t01	Wine grape	mitochondrion	82.88	82.51
PGSC0003DMT400001914	Potato	mitochondrion	84.68	82.1
Solyc01g109620.2.1	Tomato	plastid	84.68	82.1
GSMUA_Achr2P13190_001	Banana	mitochondrion	80.18	81.28
PGSC0003DMT400084285	Potato	mitochondrion	83.78	81.22
Solyc10g051350.1.1	Tomato	mitochondrion	83.78	81.22
Zm00001d013156_P001	Maize	mitochondrion	80.63	80.27
KRH60378	Soybean	extracellular	80.18	80.18
TraesCS5A01G408100.1	Wheat	plastid	79.73	79.37
TraesCS5B01G413000.1	Wheat	golgi	79.73	79.37
TraesCS5D01G418000.1	Wheat	mitochondrion	79.73	79.37
Zm00001d034244_P001	Maize	extracellular, plasma membrane	79.28	78.92
KXG37457	Sorghum	mitochondrion	79.73	70.52
HORVU5Hr1G098910.3	Barley	plastid	68.47	51.35
Bra041055.1-P	Field mustard	mitochondrion	18.47	23.84

Protein Annotations

MapMan:2.4.1.2.4	Gene3D:3.30.70.3270	InterPro:4Fe4S_Fe-S-bd	InterPro:4Fe4S_Fe_S_CS	EnsemblPlantsGene:Bra035083	EnsemblPlants:Bra035083.1
EnsemblPlants:Bra035083.1-P	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0008150
GO:GO:0008152	GO:GO:0016020	GO:GO:0016651	GO:GO:0051539	GO:GO:0055114	InterPro:IPR017896
UniProt:M4F1Y6	HAMAP:MF_01351	InterPro:NADH_quinone_OxRdtase_chainI	PFAM:PF12838	ScanProsite:PS00198	PFscan:PS51379
PANTHER:PTHR10849	PANTHER:PTHR10849:SF20	SUPFAM:SSF54862	TIGRFAMs:TIGR01971	UniParc:UPI0002541CD3	SEG:seg

Description

AT1G79010 (E=6e-116) | NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial (TYKY)

Coordinates

chrA07:-:22093200..22094979

Molecular Weight (calculated)

25565.3 Da

IEP (calculated)

4.983

GRAVY (calculated)

-0.568

Length

222 amino acids

Sequence
(BLAST)

001: MASMLARRSL DTIRARHLVL SGQALQGSHL SRLQSRAISY GSKKDDEEEE QLAKEISKDW NTVFERSINT LFLTEMVRGL SLTLKYFFDP KVTINYPFEK
101: GPLSPRFRGE HALRRYPTGE ERCIACKLCE AVCPAQAITI EAEEREDGSR RTTRYDIDMT KCIYCGFCQE ACPVDAIVEG PNFEFATETH EELLYDKEKL
201: LENGDRWETE IAENLKSESL YR

Best Arabidopsis Sequence Match ( AT1G79010.1 )
(BLAST)

001: MASILARRSL NTLRARHLVL SGQALQGSHL SRLQSRGISY GSNKDDEEAE QLSKEISKDW NTVFERSINT LFLTEMVRGL SLTLKYFFDP KVTINYPFEK
101: GPLSPRFRGE HALRRYPTGE ERCIACKLCE AVCPAQAITI EAEEREDGSR RTTRYDIDMT KCIYCGFCQE ACPVDAIVEG PNFEFATETH EELLYDKEKL
201: LENGDRWETE IAENLRSESL YR

Arabidopsis Description

NADH dehydrogenase [ubiquinone] iron-sulfur protein 8-A, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q42599]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.