CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 8
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	secretory
EpiLoc:	mitochondrion
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Plant-mPloc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

mitochondrion: 21766870
mitochondrion: 27780359

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 21766870 doi

S Komatsu, A Yamamoto, T Nakamura, MZ Nouri, Y Nanjo, K Nishizawa, K Furukawa

National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH21490	Soybean	mitochondrion	98.65	98.65
KRH60378	Soybean	extracellular	89.19	89.19
GSMUA_Achr5P02040_001	Banana	mitochondrion	56.31	88.65
AT1G16700.1	Thale cress	mitochondrion	87.39	87.39
VIT_03s0063g02550.t01	Wine grape	mitochondrion	87.39	87.0
CDY40039	Canola	mitochondrion	85.14	86.3
Bra003627.1-P	Field mustard	mitochondrion	86.04	86.04
CDX88498	Canola	mitochondrion	86.04	86.04
CDY57950	Canola	mitochondrion	86.04	86.04
Solyc01g109620.2.1	Tomato	plastid	88.74	86.03
PGSC0003DMT400001914	Potato	mitochondrion	88.74	86.03
AT1G79010.1	Thale cress	mitochondrion	85.59	85.59
CDX87415	Canola	mitochondrion	85.59	85.59
Bra035083.1-P	Field mustard	mitochondrion	85.59	85.59
PGSC0003DMT400084285	Potato	mitochondrion	87.84	85.15
CDY35112	Canola	mitochondrion	85.14	85.14
Solyc10g051350.1.1	Tomato	mitochondrion	87.39	84.72
TraesCS5D01G418000.1	Wheat	mitochondrion	83.33	82.96
TraesCS5B01G413000.1	Wheat	golgi	83.33	82.96
TraesCS5A01G408100.1	Wheat	plastid	82.88	82.51
Zm00001d034244_P001	Maize	extracellular, plasma membrane	82.43	82.06
GSMUA_Achr2P13190_001	Banana	mitochondrion	80.63	81.74
Zm00001d013156_P001	Maize	mitochondrion	81.53	81.17
KXG37457	Sorghum	mitochondrion	81.53	72.11
HORVU5Hr1G098910.3	Barley	plastid	70.27	52.7
KRG99584	Soybean	mitochondrion	10.36	25.0
KRG89704	Soybean	mitochondrion	8.11	18.0

Protein Annotations

MapMan:2.4.1.2.4	Gene3D:3.30.70.3270	InterPro:4Fe4S_Fe-S-bd	InterPro:4Fe4S_Fe_S_CS	EMBL:ACUP02009160	EnsemblPlantsGene:GLYMA_15G071900
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0008150	GO:GO:0008152
GO:GO:0016020	GO:GO:0016651	GO:GO:0051539	GO:GO:0055114	UniProt:I1MEF5	InterPro:IPR017896
EnsemblPlants:KRH10832	ProteinID:KRH10832	ProteinID:KRH10832.1	ProteinID:KRH10833.1	ProteinID:KRH10834.1	HAMAP:MF_01351
InterPro:NADH_quinone_OxRdtase_chainI	PFAM:PF12838	ScanProsite:PS00198	PFscan:PS51379	PANTHER:PTHR10849	PANTHER:PTHR10849:SF20
SUPFAM:SSF54862	TIGRFAMs:TIGR01971	UniParc:UPI00023D3069	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr15:+:5495729..5499198

Molecular Weight (calculated)

25599.4 Da

IEP (calculated)

5.262

GRAVY (calculated)

-0.524

Length

222 amino acids

Sequence
(BLAST)

001: MAAILARKSL LALRARQLAV SGQGLHSSQN YGLRLSAHSY STKREDEERE QLAKEISKDW SSVFERSINT LFLTEMVRGL MLTLKYFFET KVTINYPFEK
101: GPLSPRFRGE HALRRYPTGE ERCIACKLCE AICPAQAITI EAEEREDGSR RTTRYDIDMT KCIYCGFCQE ACPVDAIVEG PNFEFATETH EELLYDKEKL
201: LENGDRWETE IAENLRSESL YR

Best Arabidopsis Sequence Match ( AT1G16700.1 )
(BLAST)

001: MASLLARRSF SALRARHLAF SGQGLQGSHL CGLQSRAISY GSNKDDEEAE QLAKEISKDW STVFERSMNT LFLTEMVRGL SLTLKYFFDP KVTINYPFEK
101: GPLSPRFRGE HALRRYPTGE ERCIACKLCE AVCPAQAITI EAEEREDGSR RTTRYDIDMT KCIYCGFCQE ACPVDAIVEG PNFEFATETH EELLYDKEKL
201: LENGDRWETE IAENLRSESL YR

Arabidopsis Description

NADH dehydrogenase [ubiquinone] iron-sulfur protein 8-B, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FX83]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.