Factsheet for GSMUA_Achr2P13190_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 8

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P02040_001	Banana	mitochondrion	57.08	88.65
Zm00001d034244_P001	Maize	extracellular, plasma membrane	82.65	81.17
Zm00001d013156_P001	Maize	mitochondrion	82.65	81.17
CDY40039	Canola	mitochondrion	80.82	80.82
TraesCS5D01G418000.1	Wheat	mitochondrion	82.19	80.72
TraesCS5B01G413000.1	Wheat	golgi	82.19	80.72
TraesCS5A01G408100.1	Wheat	plastid	82.19	80.72
AT1G79010.1	Thale cress	mitochondrion	81.74	80.63
KRH10832	Soybean	mitochondrion	81.74	80.63
AT1G16700.1	Thale cress	mitochondrion	81.74	80.63
CDY35112	Canola	mitochondrion	81.74	80.63
CDX88498	Canola	mitochondrion	81.74	80.63
Bra003627.1-P	Field mustard	mitochondrion	81.28	80.18
KRH21490	Soybean	mitochondrion	81.28	80.18
Bra035083.1-P	Field mustard	mitochondrion	81.28	80.18
CDX87415	Canola	mitochondrion	81.28	80.18
CDY57950	Canola	mitochondrion	81.28	80.18
PGSC0003DMT400001914	Potato	mitochondrion	83.11	79.48
Solyc01g109620.2.1	Tomato	plastid	83.11	79.48
PGSC0003DMT400084285	Potato	mitochondrion	82.19	78.6
Solyc10g051350.1.1	Tomato	mitochondrion	81.74	78.17
VIT_03s0063g02550.t01	Wine grape	mitochondrion	79.0	77.58
KRH60378	Soybean	extracellular	78.54	77.48
KXG37457	Sorghum	mitochondrion	82.19	71.71
HORVU5Hr1G098910.3	Barley	plastid	73.06	54.05
GSMUA_AchrUn_...	Banana	mitochondrion	14.61	26.23

Protein Annotations

MapMan:2.4.1.2.4	Gene3D:3.30.70.3270	InterPro:4Fe4S_Fe-S-bd	InterPro:4Fe4S_Fe_S_CS	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005575	GO:GO:0008150	GO:GO:0008152	GO:GO:0016020	GO:GO:0016651
GO:GO:0051539	GO:GO:0055114	EnsemblPlantsGene:GSMUA_Achr2G13190_001	EnsemblPlants:GSMUA_Achr2P13190_001	EnsemblPlants:GSMUA_Achr2T13190_001	InterPro:IPR017896
UniProt:M0S7L0	HAMAP:MF_01351	InterPro:NADH_quinone_OxRdtase_chainI	PFAM:PF12838	ScanProsite:PS00198	PFscan:PS51379
PANTHER:PTHR10849	PANTHER:PTHR10849:SF20	SUPFAM:SSF54862	TIGRFAMs:TIGR01971	UniParc:UPI000295F800	SEG:seg

Description

NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial [Source:GMGC_GENE;Acc:GSMUA_Achr2G13190_001]

Coordinates

chr2:+:15412322..15416471

Molecular Weight (calculated)

25334.0 Da

IEP (calculated)

5.264

GRAVY (calculated)

-0.663

Length

219 amino acids

Sequence
(BLAST)

001: MAQRAMQALR AGQPAQGRQS SLVLKNHWQS FNSGSSSSKF KDDEEKEKLA KEIAKDWNAV FDRSINTLFL TEMVRGLMLT LKYFFERKVT INYPFEKGPL
101: SPRFRGEHAL RRYPTGEERC IACKLCEAIC PAQAITIEAE EREDGSRRTT RYDIDMTKCI YCGFCQEACP VDAIVEGPNF EFATETHEEL LYDKEKLLEN
201: GDRWETEISE NLRSESLYR

Best Arabidopsis Sequence Match ( AT1G79010.1 )
(BLAST)

001: MASILARRSL NTLRARHLVL SGQALQGSHL SRLQSRGISY GSNKDDEEAE QLSKEISKDW NTVFERSINT LFLTEMVRGL SLTLKYFFDP KVTINYPFEK
101: GPLSPRFRGE HALRRYPTGE ERCIACKLCE AVCPAQAITI EAEEREDGSR RTTRYDIDMT KCIYCGFCQE ACPVDAIVEG PNFEFATETH EELLYDKEKL
201: LENGDRWETE IAENLRSESL YR

Arabidopsis Description

NADH dehydrogenase [ubiquinone] iron-sulfur protein 8-A, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q42599]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.