CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	secretory
iPSORT:	plastid
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH10832	Soybean	mitochondrion	89.19	89.19
KRH21490	Soybean	mitochondrion	87.84	87.84
GSMUA_Achr5P02040_001	Banana	mitochondrion	55.41	87.23
AT1G16700.1	Thale cress	mitochondrion	81.98	81.98
CDY40039	Canola	mitochondrion	80.18	81.28
Bra003627.1-P	Field mustard	mitochondrion	81.08	81.08
CDY57950	Canola	mitochondrion	81.08	81.08
CDX88498	Canola	mitochondrion	80.63	80.63
Bra035083.1-P	Field mustard	mitochondrion	80.18	80.18
CDX87415	Canola	mitochondrion	80.18	80.18
CDY35112	Canola	mitochondrion	80.18	80.18
AT1G79010.1	Thale cress	mitochondrion	79.28	79.28
PGSC0003DMT400001914	Potato	mitochondrion	81.53	79.04
Solyc01g109620.2.1	Tomato	plastid	81.53	79.04
Solyc10g051350.1.1	Tomato	mitochondrion	81.08	78.6
GSMUA_Achr2P13190_001	Banana	mitochondrion	77.48	78.54
PGSC0003DMT400084285	Potato	mitochondrion	80.63	78.17
VIT_03s0063g02550.t01	Wine grape	mitochondrion	78.38	78.03
TraesCS5D01G418000.1	Wheat	mitochondrion	77.93	77.58
TraesCS5B01G413000.1	Wheat	golgi	77.93	77.58
TraesCS5A01G408100.1	Wheat	plastid	77.93	77.58
Zm00001d034244_P001	Maize	extracellular, plasma membrane	77.03	76.68
Zm00001d013156_P001	Maize	mitochondrion	76.58	76.23
KXG37457	Sorghum	mitochondrion	76.13	67.33
HORVU5Hr1G098910.3	Barley	plastid	69.37	52.03
KRG99584	Soybean	mitochondrion	10.36	25.0
KRG89704	Soybean	mitochondrion	8.11	18.0

Protein Annotations

MapMan:2.4.1.2.4	Gene3D:3.30.70.3270	InterPro:4Fe4S_Fe-S-bd	InterPro:4Fe4S_Fe_S_CS	UniProt:A0A0R0K0K3	EMBL:ACUP02003364
EnsemblPlantsGene:GLYMA_05G236100	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0008150
GO:GO:0008152	GO:GO:0016020	GO:GO:0016651	GO:GO:0051539	GO:GO:0055114	InterPro:IPR017896
EnsemblPlants:KRH60378	ProteinID:KRH60378	ProteinID:KRH60378.1	HAMAP:MF_01351	InterPro:NADH_quinone_OxRdtase_chainI	PFAM:PF12838
ScanProsite:PS00198	PFscan:PS51379	PANTHER:PTHR10849	PANTHER:PTHR10849:SF20	SUPFAM:SSF54862	SignalP:SignalP-noTM
TIGRFAMs:TIGR01971	UniParc:UPI0006EE06B1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr5:+:41255216..41258112

Molecular Weight (calculated)

25739.6 Da

IEP (calculated)

4.772

GRAVY (calculated)

-0.441

Length

222 amino acids

Sequence
(BLAST)

001: MKKLILHSHL SLLLIYCQAV SGQGLHNFQN YGLPLSAQSY STKKEDEERE QLAKEISKDW SSVFERSINT FFLTEMVRGL MLTLKYFFET KVTINYPFEK
101: GPLSPRFRGE HALRQYPTGE ERCIACKLCE AICPVQAITI EAEEREDGSR RTTRYDIDMT KCIYCGFCQE ACPVDAIVEG PNFEFATETH EELLYDKEKL
201: LENGDRWETE IAENLISESL YR

Best Arabidopsis Sequence Match ( ATCG01090.1 )
(BLAST)

001: MLPMITGFMN YGQQTLRAAR YIGQGFMITL SHTNRLPVTI QYPYEKLITS ERFRGRIHFE FDKCIACEVC VRVCPIDLPV VDWKLETNIR KKRLLNYSID
101: FGICIFCGNC VEYCPTNCLS MTEEYEFSTY DRHELNYNQI ALGRLPMSVI DDYTIRTIWN SPQTKNGVNP LI

Arabidopsis Description

NDHINAD(P)H-quinone oxidoreductase subunit I, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P56755]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.