Factsheet for Solyc11g021220.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX95228	Canola	mitochondrion	87.43	87.43
CDY03035	Canola	mitochondrion	87.43	87.43
CDY19662	Canola	mitochondrion	87.43	87.43
CDY21197	Canola	mitochondrion, plastid	87.43	87.43
ATCG01090.1	Thale cress	mitochondrion	87.43	84.88
GSMUA_AchrUn_...	Banana	mitochondrion	59.28	81.15
OQU91689	Sorghum	extracellular	32.34	65.85
Solyc02g011780.1.1	Tomato	nucleus	53.29	62.24
Solyc01g086880.1.1	Tomato	extracellular	34.13	42.54
Solyc10g051350.1.1	Tomato	mitochondrion	24.55	17.9
Solyc01g109620.2.1	Tomato	plastid	23.95	17.47

Protein Annotations

MapMan:1.1.8.1.2.2	Gene3D:3.30.70.3270	InterPro:4Fe4S_Fe-S-bd	InterPro:4Fe4S_Fe_S_CS	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005506	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006091	GO:GO:0008137	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009535
GO:GO:0009536	GO:GO:0009579	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020	GO:GO:0016491
GO:GO:0016651	GO:GO:0016655	GO:GO:0019684	GO:GO:0046872	GO:GO:0048038	GO:GO:0051536
GO:GO:0051539	GO:GO:0055114	InterPro:IPR017896	UniProt:K4D771	InterPro:NADH_plast_OxRdtase_su_I	InterPro:NADH_quinone_OxRdtase_chainI
PFAM:PF00037	ScanProsite:PS00198	PFscan:PS51379	PANTHER:PTHR10849	PANTHER:PTHR10849:SF23	SUPFAM:SSF54862
EnsemblPlantsGene:Solyc11g021220.1	EnsemblPlants:Solyc11g021220.1.1	TIGRFAMs:TIGR00403	TIGRFAMs:TIGR01971	UniParc:UPI0002769675	:

Description

NAD(P)H-quinone oxidoreductase subunit I, chloroplastic [Source:Projected from Arabidopsis thaliana (ATCG01090) UniProtKB/Swiss-Prot;Acc:P56755]

Coordinates

chr11:-:13390233..13390736

Molecular Weight (calculated)

19452.8 Da

IEP (calculated)

5.223

GRAVY (calculated)

0.022

Length

167 amino acids

Sequence
(BLAST)

001: MLPMIIEFIN YGQQTIRAAK YIGQVFMITL SHANRLPVTI QYPYEKLITS ERFQGRIHFE FDKCIACEVC VRLCLIDLPV VDWKLKTDIP KKRLLNYSID
101: FGICIFCGNC VEYCPTNCLS MTEEYEFSTY DRQELNYNQI ALGCLPMSVI DDHTIRTISN LPQINNE

Best Arabidopsis Sequence Match ( ATCG01090.1 )
(BLAST)

001: MLPMITGFMN YGQQTLRAAR YIGQGFMITL SHTNRLPVTI QYPYEKLITS ERFRGRIHFE FDKCIACEVC VRVCPIDLPV VDWKLETNIR KKRLLNYSID
101: FGICIFCGNC VEYCPTNCLS MTEEYEFSTY DRHELNYNQI ALGRLPMSVI DDYTIRTIWN SPQTKNGVNP LI

Arabidopsis Description

NDHINAD(P)H-quinone oxidoreductase subunit I, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P56755]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.