Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 3
- cytosol 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc11g021220.1.1 | Tomato | plastid | 62.24 | 53.29 |
| OQU91689 | Sorghum | extracellular | 25.87 | 45.12 |
| KRG99584 | Soybean | mitochondrion | 25.87 | 40.22 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 34.27 | 40.16 |
| Solyc01g086880.1.1 | Tomato | extracellular | 25.17 | 26.87 |
| Solyc01g109620.2.1 | Tomato | plastid | 20.28 | 12.66 |
| Solyc10g051350.1.1 | Tomato | mitochondrion | 20.28 | 12.66 |
Protein Annotations
| EnsemblPlants:Solyc02g011780.1.1 | EnsemblPlantsGene:Solyc02g011780.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0008137 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0055114 | InterPro:NADH_plast_OxRdtase_su_I | PANTHER:PTHR10849 | PANTHER:PTHR10849:SF23 | SUPFAM:SSF54862 |
| UniParc:UPI000276806D | UniProt:K4B4H7 | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr2:-:13781246..13781734
Molecular Weight (calculated)
16949.3 Da
IEP (calculated)
8.028
GRAVY (calculated)
-0.399
Length
143 amino acids
Sequence
(BLAST)
(BLAST)
001: MITLSHANRS PVTIQNPYEK LIKSERFRGR IYFEFDKCIS CEVCVRKLLL NYDIDFDFVY FVVLALSIAQ NNFLSMTEEY ELSTYDRHEL NYNKISLGRL
101: PMSVIDDYTI RTNSKLPQIN NDETLNSIQK NYKLRRLSSD LKQ
101: PMSVIDDYTI RTNSKLPQIN NDETLNSIQK NYKLRRLSSD LKQ
001: MLPMITGFMN YGQQTLRAAR YIGQGFMITL SHTNRLPVTI QYPYEKLITS ERFRGRIHFE FDKCIACEVC VRVCPIDLPV VDWKLETNIR KKRLLNYSID
101: FGICIFCGNC VEYCPTNCLS MTEEYEFSTY DRHELNYNQI ALGRLPMSVI DDYTIRTIWN SPQTKNGVNP LI
101: FGICIFCGNC VEYCPTNCLS MTEEYEFSTY DRHELNYNQI ALGRLPMSVI DDYTIRTIWN SPQTKNGVNP LI
Arabidopsis Description
NDHINAD(P)H-quinone oxidoreductase subunit I, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P56755]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.