CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
vacuole 1
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
mitochondrion: 27780359

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG88442
KRG90692
KRG96447
KRH00516
KRH04413
KRH09710
KRH10832
KRH11550
KRH12694
KRH12696
KRH13331
KRH15514
KRH15676
KRH16100
KRH19632
KRH20678
KRH21490
KRH23599
KRH27732
KRH31690
KRH33026
KRH36573
KRH37810
KRH38334
KRH40639
KRH41125
KRH42439
KRH49068
KRH52179
KRH58129
KRH58545
KRH59820
KRH60378
KRH61494
KRH68191
KRH69090
KRH71875
KRH77692

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G47930.1	KRH10832	AT1G79010.1	12837548
AT3G47930.1	KRH21490	AT1G79010.1	12837548
AT3G47930.1	KRH60378	AT1G79010.1	12837548
AT3G47930.1	KRG90692	AT2G02050.1	12837548
AT3G47930.1	KRH16100	AT2G02050.1	12837548
AT3G47930.1	KRH19632	AT2G20360.1	12837548
AT3G47930.1	KRH49068	AT2G31490.1	12837548
AT3G47930.1	KRH33026	AT2G42310.1	12837548
AT3G47930.1	KRH71875	AT2G42310.1	12837548
AT3G47930.1	KRG96447	AT2G47690.1	12837548
AT3G47930.1	KRH68191	AT2G47690.1	12837548
AT3G47930.1	KRH27732	AT3G03100.1	12837548
AT3G47930.1	KRH77692	AT3G03100.1	12837548
AT3G47930.1	KRH00516	AT3G08610.1	12837548
AT3G47930.1	KRH40639	AT3G08610.1	12837548
AT3G47930.1	KRH13331	AT3G12260.1	12837548
AT3G47930.1	KRH20678	AT3G12260.1	12837548
AT3G47930.1	KRH37810	AT3G12260.1	12837548
AT3G47930.1	KRH41125	AT3G48680.1	12837548
AT3G47930.1	KRH59820	AT3G48680.1	12837548
AT3G47930.1	KRH33026	AT3G57785.1	12837548
AT3G47930.1	KRH71875	AT3G57785.1	12837548
AT3G47930.1	KRH09710	AT4G02580.1	12837548
AT3G47930.1	KRH23599	AT4G02580.1	12837548
AT3G47930.1	KRH11550	AT4G16450.1	12837548
AT3G47930.1	KRH36573	AT4G16450.1	12837548
AT3G47930.1	KRH42439	AT4G20150.1	12837548
AT3G47930.1	KRH58545	AT4G20150.1	12837548
AT3G47930.1	KRH31690	AT5G08530.1	12837548
AT3G47930.1	KRH69090	AT5G08530.1	12837548
AT3G47930.1	KRH15514	AT5G11770.1	12837548
AT3G47930.1	KRH52179	AT5G11770.1	12837548
AT3G47930.1	KRH61494	AT5G11770.1	12837548
AT3G47930.1	KRH38334	AT5G52840.1	12837548
AT3G47930.1	KRH04413	AT5G67590.1	12837548
AT3G47930.1	KRH58129	AT5G67590.1	12837548
AT3G47930.1	KRH15676	ATMG00510.1	12837548
AT3G47930.1	KRG88442	ATMG00513.1	12837548
AT3G47930.1	KRH12694	ATMG00513.1	12837548
AT3G47930.1	KRH12696	ATMG00513.1	12837548

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH33172	Soybean	mitochondrion	86.3	86.45
VIT_08s0007g05710.t01	Wine grape	mitochondrion	80.14	76.85
Bra018100.1-P	Field mustard	mitochondrion	77.05	74.88
CDY36916	Canola	mitochondrion	77.05	74.88
CDY24145	Canola	mitochondrion	76.54	74.5
Solyc10g079470.2.1	Tomato	nucleus	74.83	74.32
AT3G47930.1	Thale cress	mitochondrion	77.57	74.26
PGSC0003DMT400020997	Potato	mitochondrion	74.49	73.85
TraesCS5B01G132600.1	Wheat	plastid	72.09	72.09
TraesCS5D01G140400.2	Wheat	mitochondrion	71.92	71.92
Os11t0143500-01	Rice	mitochondrion	71.4	71.53
Os12t0139600-01	Rice	mitochondrion	71.4	71.53
HORVU5Hr1G043060.2	Barley	mitochondrion	71.23	71.23
KXG27706	Sorghum	mitochondrion	70.89	70.77
TraesCS5A01G132300.2	Wheat	mitochondrion	71.4	67.69
GSMUA_Achr6P21390_001	Banana	cytosol	47.43	63.1
Zm00001d004956_P001	Maize	mitochondrion	71.06	45.91

Protein Annotations

KEGG:00053+1.3.2.3	MapMan:10.3.1.8	EntrezGene:100526948	Gene3D:3.30.43.10	Gene3D:3.30.465.10	EMBL:ACUP02001065
InterPro:ALO	InterPro:FAD-bd_2	InterPro:FAD-bd_2-like_sf	InterPro:FAD-bd_2_sub1	InterPro:FAD_lactone_oxidase	EnsemblPlantsGene:GLYMA_02G166300
InterPro:GL_DH	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003885	GO:GO:0005488
GO:GO:0005575	GO:GO:0008150	GO:GO:0008152	GO:GO:0016020	GO:GO:0016491	GO:GO:0016614
GO:GO:0016633	GO:GO:0016899	GO:GO:0050660	GO:GO:0055114	GO:GO:0071949	UniProt:I1JFY3
InterPro:IPR016166	InterPro:IPR016167	EnsemblPlants:KRH71746	ProteinID:KRH71746	ProteinID:KRH71746.1	InterPro:Oxid_FAD_bind_N
PFAM:PF01565	PFAM:PF04030	PIRSF:PIRSF000136	PFscan:PS51387	PANTHER:PTHR43762	PANTHER:PTHR43762:SF1
MetaCyc:PWY-882	SUPFAM:SSF56176	TIGRFAMs:TIGR01676	UniParc:UPI00023BC3F9	SEG:seg	:

Description

hypothetical protein

Coordinates

chr2:+:25143239..25149235

Molecular Weight (calculated)

66385.3 Da

IEP (calculated)

8.087

GRAVY (calculated)

-0.564

Length

584 amino acids

Sequence
(BLAST)

001: MLRTLVVKRS LGHHWHSHSQ HLRLQRQFSS SPEPNSSVDA ETRKYAGYAA LLLFCGGATY YTFPLPDDAK HKKAQIFRYA PLPEDLHTVS NWSGTHEVQT
101: RNFLQPENAE QLERELREAR SRIRPVGSGL SPNGIGLSRT GMVNLALMDG ILEVDKQRKT VRVQAGIRVQ QLVDGLKDHG LTLQNFASIR EQQIGGIIQV
201: GAHGTGARLP PIDEQVIAMK LVTPAKGTIE ISKDKDPELF YLARCGLGGL GVVAEVTLQC VDRQELVEHT VVSTMNEIKK NHKKLLSENK HVKYLYIPYT
301: DSVVVVRCNP VSKWKGPPKF KPQYTKDEAI QHVRDLYQES LKKYGAEGSK GKSAEDGEQN IDELSFTELR DKLIALDPLD KKHIININKA EAEFWRKSEG
401: YRVGWSDEIL GFDCGGQQWV SETCFPAGKL ANPSMKDLEY IEELKQLIEK EEIPAPAPIE QRWTASSRSS LSPASSPSED DIFSWVGIIM YLPTMDARQR
501: KDITEEFFHY RHLTQAKLWD CYSAYEHWAK IEVPKDKKEL AALQERLRKR FPVDAYNKAR KELDPNRILS NNMLEKLFPQ SDTI

Best Arabidopsis Sequence Match ( AT3G47930.1 )
(BLAST)

001: MLRSLLLRRS VGHSLGTLSP SSSTIRSSFS PHRTLCTTGQ TLTPPPPPPP RPPPPPPATA SEAQFRKYAG YAALAIFSGV ATYFSFPFPE NAKHKKAQIF
101: RYAPLPEDLH TVSNWSGTHE VQTRNFNQPE NLADLEALVK ESHEKKLRIR PVGSGLSPNG IGLSRSGMVN LALMDKVLEV DKEKKRVTVQ AGIRVQQLVD
201: AIKDYGLTLQ NFASIREQQI GGIIQVGAHG TGARLPPIDE QVISMKLVTP AKGTIELSRE KDPELFHLAR CGLGGLGVVA EVTLQCVARH ELVEHTYVSN
301: LQEIKKNHKK LLSANKHVKY LYIPYTDTVV VVTCNPVSKW SGPPKDKPKY TTDEAVQHVR DLYRESIVKY RVQDSGKKSP DSSEPDIQEL SFTELRDKLL
401: ALDPLNDVHV AKVNQAEAEF WKKSEGYRVG WSDEILGFDC GGQQWVSESC FPAGTLANPS MKDLEYIEEL KKLIEKEAIP APAPIEQRWT ARSKSPISPA
501: FSTSEDDIFS WVGIIMYLPT ADPRQRKDIT DEFFHYRHLT QKQLWDQFSA YEHWAKIEIP KDKEELEALQ ARIRKRFPVD AYNKARRELD PNRILSNNMV
601: EKLFPVSTTA

Arabidopsis Description

GLDHGLDH [Source:UniProtKB/TrEMBL;Acc:A0A178VN92]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.