CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

plastid 1
mitochondrion 8
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
mitochondrion: 27780359
endoplasmic reticulum: 28499913
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_07s0005g04440.t01	Wine grape	mitochondrion	77.62	83.46
Solyc09g064450.2.1	Tomato	nucleus	70.86	75.81
GSMUA_Achr4P04460_001	Banana	mitochondrion	69.93	75.76
Zm00001d018479_P001	Maize	mitochondrion, plasma membrane, plastid	60.37	75.73
CDY31970	Canola	mitochondrion	67.83	72.39
CDY39772	Canola	mitochondrion	67.6	71.96
AT2G20360.1	Thale cress	mitochondrion	67.37	71.89
CDY03308	Canola	mitochondrion	67.13	71.64
Os02t0816800-01	Rice	mitochondrion	66.43	69.85
EES06013	Sorghum	mitochondrion	66.2	69.61
TraesCS6D01G374400.1	Wheat	golgi	64.8	67.31
TraesCS6A01G389100.1	Wheat	golgi, unclear	64.8	67.15
TraesCS6B01G430100.1	Wheat	nucleus	64.8	67.15
HORVU6Hr1G090720.1	Barley	plasma membrane	64.34	66.83
Bra036681.1-P	Field mustard	mitochondrion	66.67	51.07
Os02t0801300-01	Rice	cytosol, nucleus	7.23	21.53
Os02t0800500-02	Rice	nucleus	7.23	21.53

Protein Annotations

EntrezGene:100796585	MapMan:2.4.1.4.1.5	Gene3D:3.40.50.720	EMBL:ACUP02008193	EnsemblPlantsGene:GLYMA_13G127400	GO:GO:0003674
GO:GO:0003824	GO:GO:0003954	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0055114	GO:GO:1901006	UniProt:I1LYP7	EnsemblPlants:KRH19632	ProteinID:KRH19632	ProteinID:KRH19632.1
InterPro:NAD(P)-bd_dom_sf	InterPro:NmrA-like	PFAM:PF05368	PANTHER:PTHR12126	PANTHER:PTHR12126:SF7	SUPFAM:SSF51735
TMHMM:TMhelix	UniParc:UPI00023CFD65	:	:	:	:

Description

hypothetical protein

Coordinates

chr13:-:24032411..24038688

Molecular Weight (calculated)

47877.5 Da

IEP (calculated)

9.898

GRAVY (calculated)

-0.055

Length

429 amino acids

Sequence
(BLAST)

001: MQTIARRLGQ QSLRPSTSLK SIYPISDHHY GMDHERYVST LATKGVGHLV RKGTGGRSSV SGIIATVFGA TGFLGRYVVQ QLAKMGSQVL VPFRGSEDNP
101: RHLKLMGDLG QIVPMKYNPR DESSVKAVMA KANVVINLIG RDYETRNYSF EEVHYHMAEQ LAKISKEHGG ILRFIQVSCL GASPSSPSRM LRTKSAAEEM
201: ILRELPEATI LKPAVMIGTE DRILNPWAHF AKKYGFLPLF GDGSTKIQPV YVIDVAAALT SLLKDDGTSM GKIYELGGPE IFTVHELADV MFDTIREWPR
301: YVKVPFPIAK ALATPREILL NKVPFPLPVP EILNLDKIQA LTTDTVVSEN GKFLYLIIRS FFFSRHYRTV SLMSHIFCLM KFAALTFNDL GIVPHKLKGY
401: PIEFLISYRK GGPQFGSTIS ERVTPDSWP

Best Arabidopsis Sequence Match ( AT2G20360.1 )
(BLAST)

001: MQVVSRRLVQ RPLVGGASIY SSSSLRSLYG VSNHLNGTDN CRYSSSLATK GVGHLARKGT GGRSSVSGIV ATVFGATGFL GRYLVQQLAK MGSQVLVPFR
101: GSEDSPRHLK LMGDLGQVVP MKFDPRDEDS IKAVMAKANV VINLIGREYE TRNFSFEDAN HHIAEKLALV AKEHGGIMRY IQVSCLGASV SSPSRMLRAK
201: AAAEEAVLNA LPEATIMRPA TMIGTEDRIL NPWSMFVKKY GFLPLIGGGT TKFQPVYVVD VAAAIVAALK DDGSSMGKTY ELGGPDVFTT HELAEIMYDM
301: IREWPRYVKL PFPIAKAMAA PRDFMVNKVP FPLPSPQIFN LDQINALTTD TLVSDNALKF QDLDLVPHKL KGYPVEFLIQ YRKGGPNFGS TVSEKIPTDF
401: YP

Arabidopsis Description

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SK66]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.