Factsheet for Solyc09g064450.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
mitochondrion 7
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 25464976
plastid: 26371478
unclear: 26455813
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d018479_P001	Maize	mitochondrion, plasma membrane, plastid	65.59	76.9
VIT_07s0005g04440.t01	Wine grape	mitochondrion	76.31	76.69
GSMUA_Achr4P04460_001	Banana	mitochondrion	72.82	73.74
CDY39772	Canola	mitochondrion	72.57	72.21
CDY31970	Canola	mitochondrion	72.32	72.14
CDY03308	Canola	mitochondrion	72.07	71.89
AT2G20360.1	Thale cress	mitochondrion	72.07	71.89
KRH19632	Soybean	mitochondrion, nucleus	75.81	70.86
EES06013	Sorghum	mitochondrion	71.07	69.85
Os02t0816800-01	Rice	mitochondrion	70.07	68.87
HORVU6Hr1G090720.1	Barley	plasma membrane	70.07	68.04
TraesCS6D01G374400.1	Wheat	golgi	70.07	68.04
TraesCS6A01G389100.1	Wheat	golgi, unclear	70.07	67.87
TraesCS6B01G430100.1	Wheat	nucleus	70.07	67.87
Bra036681.1-P	Field mustard	mitochondrion	71.32	51.07
Os02t0800500-02	Rice	nucleus	8.48	23.61
Os02t0801300-01	Rice	cytosol, nucleus	8.48	23.61

Protein Annotations

EnsemblPlants:Solyc09g064450.2.1	EnsemblPlantsGene:Solyc09g064450.2	Gene3D:3.40.50.720	GO:GO:0003674	GO:GO:0003824	GO:GO:0003954
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0055114	GO:GO:1901006
InterPro:NAD(P)-bd_dom	InterPro:NAD(P)-bd_dom_sf	PANTHER:PTHR12126	PANTHER:PTHR12126:SF7	PFAM:PF13460	SEG:seg
SUPFAM:SSF51735	UniParc:UPI000276C12B	UniProt:K4CU73	MapMan:2.4.1.4.1.5	:	:

Description

No Description!

Coordinates

chr9:+:61728914..61739987

Molecular Weight (calculated)

43742.0 Da

IEP (calculated)

9.736

GRAVY (calculated)

-0.097

Length

401 amino acids

Sequence
(BLAST)

001: MQAITRKLGH QSLKHHSPAI SSFKSLYPLS DDHYYGYLTP RYASNLATGG AGPLIRKGTG GRSSVSGIVA TVFGATGFLG RYVVQQLAKM GSQVLVPFRG
101: SEDSPRHLKL MGDLGQIVPM KYNPRDENSV KAVMAKANVV INLIGRDYET RNYSFDEVNL HIAEQLAMIA KEHGGIMRFI QVSSLGASPA SSSRLLRAKA
201: AGEEAVTREL PEATILRPSV MIGTEDRILN PWAFFAKKYG FLPLIGGGST KIQPVFVADV ASAIVSSLKD NGTSMGKVYE LGGPDIYTMH DLAELMFDMI
301: REWPRYVNVP FPIAKAIASP REFLLNKVPT PMPVPTIFNL DAIKALATDN VVSKDALTFE DLGLAPHKVK GYPVEFLIQY RKGGPNYGST VSEKMSPESY
401: P

Best Arabidopsis Sequence Match ( AT2G20360.1 )
(BLAST)

001: MQVVSRRLVQ RPLVGGASIY SSSSLRSLYG VSNHLNGTDN CRYSSSLATK GVGHLARKGT GGRSSVSGIV ATVFGATGFL GRYLVQQLAK MGSQVLVPFR
101: GSEDSPRHLK LMGDLGQVVP MKFDPRDEDS IKAVMAKANV VINLIGREYE TRNFSFEDAN HHIAEKLALV AKEHGGIMRY IQVSCLGASV SSPSRMLRAK
201: AAAEEAVLNA LPEATIMRPA TMIGTEDRIL NPWSMFVKKY GFLPLIGGGT TKFQPVYVVD VAAAIVAALK DDGSSMGKTY ELGGPDVFTT HELAEIMYDM
301: IREWPRYVKL PFPIAKAMAA PRDFMVNKVP FPLPSPQIFN LDQINALTTD TLVSDNALKF QDLDLVPHKL KGYPVEFLIQ YRKGGPNFGS TVSEKIPTDF
401: YP

Arabidopsis Description

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SK66]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.