Factsheet for TraesCS6D01G374400.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

plastid 2
mitochondrion 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G430100.1	Wheat	nucleus	98.79	98.55
TraesCS6A01G389100.1	Wheat	golgi, unclear	98.31	98.07
HORVU6Hr1G090720.1	Barley	plasma membrane	97.82	97.82
Os02t0816800-01	Rice	mitochondrion	84.02	85.05
EES06013	Sorghum	mitochondrion	82.08	83.09
Zm00001d018479_P001	Maize	mitochondrion, plasma membrane, plastid	67.8	81.87
VIT_07s0005g04440.t01	Wine grape	mitochondrion	70.46	72.93
GSMUA_Achr4P04460_001	Banana	mitochondrion	68.77	71.72
CDY31970	Canola	mitochondrion	68.28	70.15
Solyc09g064450.2.1	Tomato	nucleus	68.04	70.07
CDY39772	Canola	mitochondrion	68.04	69.73
AT2G20360.1	Thale cress	mitochondrion	67.55	69.4
CDY03308	Canola	mitochondrion	67.31	69.15
KRH19632	Soybean	mitochondrion, nucleus	67.31	64.8
Bra036681.1-P	Field mustard	mitochondrion	67.31	49.64

Protein Annotations

EnsemblPlants:TraesCS6D01G374400.1	EnsemblPlantsGene:TraesCS6D01G374400	Gene3D:3.40.50.720	InterPro:NAD(P)-bd_dom	InterPro:NAD(P)-bd_dom_sf	PANTHER:PTHR12126
PANTHER:PTHR12126:SF7	PFAM:PF13460	SEG:seg	SUPFAM:SSF51735	TIGR:cd05271	TMHMM:TMhelix
MapMan:2.4.1.4.1.5	:	:	:	:	:

Description

No Description!

Coordinates

chr6D:+:458766219..458769868

Molecular Weight (calculated)

44596.9 Da

IEP (calculated)

9.788

GRAVY (calculated)

-0.083

Length

413 amino acids

Sequence
(BLAST)

001: MQAAAAARRH LLDQHHLSPA SSAAIAAFRS AAQPALAPQG SGGADGARYM SARAPAVKGA GHLVRKGTGG RSSVSGIVAT VFGATGFLGR YVVQQLAKMG
101: SQVLVPFRGC EDSHRHLKLM GDLGQIVPMN YNPRDVNSIK TAVAKSNVVI NLIGREYETR NYGFEEVNHQ MAEQLAMISK EHGGIVRFIQ VSALGASASS
201: PSRLLRAKAA GEESVLKEFP EATIMRPATL IGTEDRILNR WAMYAKNWGF LPLFGGGSTK FQPVYVVDVA AAIVNSLKDD GTSMGKTYEL GGPDIYTVHD
301: LAEMMFETIR EYPRYVNIPF PIAKAMASPR EMLLNKVPFP LPTPSIFNLD HIKALTVDNL VSENALSFAD LEIKPHKLKG YPTEFLVCYR KGGPSFGSTV
401: SEKMGSADVA PRF

Best Arabidopsis Sequence Match ( AT2G20360.1 )
(BLAST)

001: MQVVSRRLVQ RPLVGGASIY SSSSLRSLYG VSNHLNGTDN CRYSSSLATK GVGHLARKGT GGRSSVSGIV ATVFGATGFL GRYLVQQLAK MGSQVLVPFR
101: GSEDSPRHLK LMGDLGQVVP MKFDPRDEDS IKAVMAKANV VINLIGREYE TRNFSFEDAN HHIAEKLALV AKEHGGIMRY IQVSCLGASV SSPSRMLRAK
201: AAAEEAVLNA LPEATIMRPA TMIGTEDRIL NPWSMFVKKY GFLPLIGGGT TKFQPVYVVD VAAAIVAALK DDGSSMGKTY ELGGPDVFTT HELAEIMYDM
301: IREWPRYVKL PFPIAKAMAA PRDFMVNKVP FPLPSPQIFN LDQINALTTD TLVSDNALKF QDLDLVPHKL KGYPVEFLIQ YRKGGPNFGS TVSEKIPTDF
401: YP

Arabidopsis Description

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SK66]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.