Factsheet for Os02t0816800-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6
cytosol 1

Predictors

GFP

MS/MS

Papers

mitochondrion: 19010998
plastid: 21433289
mitochondrion: 23027867
plasma membrane: 27800704
plastid: 27992503

msms PMID: 23027867 doi

G Liu, H Tian, YQ Huang, J Hu, YX Ji, SQ Li, YQ Feng, L Guo, YG Zhu

State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan 430072, China.

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 19010998 doi

S Huang, NL Taylor, R Narsai, H Eubel, J Whelan, AH Millar

Australian Research Council Centre of Excellence in Plant Energy Biology, M316, University of Western Australia, Crawley, 6009 Western Australia, Australia.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES06013	Sorghum	mitochondrion	87.01	87.01
Zm00001d018479_P001	Maize	mitochondrion, plasma membrane, plastid	72.55	86.55
HORVU6Hr1G090720.1	Barley	plasma membrane	86.03	84.99
TraesCS6D01G374400.1	Wheat	golgi	85.05	84.02
TraesCS6B01G430100.1	Wheat	nucleus	85.05	83.82
TraesCS6A01G389100.1	Wheat	golgi, unclear	84.8	83.57
GSMUA_Achr4P04460_001	Banana	mitochondrion	73.28	75.51
VIT_07s0005g04440.t01	Wine grape	mitochondrion	73.28	74.94
CDY31970	Canola	mitochondrion	70.1	71.14
CDY39772	Canola	mitochondrion	70.1	70.97
AT2G20360.1	Thale cress	mitochondrion	69.85	70.9
CDY03308	Canola	mitochondrion	69.61	70.65
Solyc09g064450.2.1	Tomato	nucleus	68.87	70.07
KRH19632	Soybean	mitochondrion, nucleus	69.85	66.43
Bra036681.1-P	Field mustard	mitochondrion	69.61	50.71
Os02t0801300-01	Rice	cytosol, nucleus	8.09	22.92
Os02t0800500-02	Rice	nucleus	8.09	22.92

Protein Annotations

MapMan:2.4.1.4.1.5	Gene3D:3.40.50.720	EntrezGene:4331143	ProteinID:BAD21515.1	ProteinID:BAD22016.1	ProteinID:BAF10430.1
ProteinID:BAS81577.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0003954	GO:GO:0005488	GO:GO:0007049
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0050662	GO:GO:0051301
GO:GO:0055114	GO:GO:1901006	InterPro:NAD(P)-bd_dom	InterPro:NAD(P)-bd_dom_sf	EnsemblPlantsGene:Os02g0816800	EnsemblPlants:Os02t0816800-01
PFAM:PF13460	PANTHER:PTHR12126	PANTHER:PTHR12126:SF7	UniProt:Q6K6A4	SUPFAM:SSF51735	TMHMM:TMhelix
UniParc:UPI0000377C0F	RefSeq:XP_015627750.1	SEG:seg	:	:	:

Description

NAD(P)-binding domain containing protein. (Os02t0816800-01)

Coordinates

chr2:+:35013576..35017647

Molecular Weight (calculated)

44311.6 Da

IEP (calculated)

9.617

GRAVY (calculated)

-0.080

Length

408 amino acids

Sequence
(BLAST)

001: MQAAAAWRRH LLDGNISPTT AAAISAFRSA SQPALAPQGL GGADGARYMS ARAPAVKGTG HLVRKGTGGR SSVSGIIATV FGATGFLGRY LVQQLAKMGS
101: QVLVPFRGSE DCHRHLKLMG DLGQIVPMKY NPRDVDSIKA VMAKSNVVIN LIGREYETRN YGFDEVNHHM AEQLAMISKE HGGIMRFIQV SSLGASASSP
201: SRMLRAKAAG EESVLKEFPE ATIMRPATMI GTEDRILNRW AQFAKNWGFL PLVDSGSTKI QPVYVVDVAA AIVNSLKDDG TSMGKTYELG GPEIYTVHEL
301: AELMYETIRE WPRYIDVPLP IARAIASPRE MLLNKVPFPL PTPSIFNKDQ INAFSVDTLV SDNALTFSDL GIVPHKLKGY PVEFLVCYRK GGPAFGSTVS
401: EKIRSSEL

Best Arabidopsis Sequence Match ( AT2G20360.1 )
(BLAST)

001: MQVVSRRLVQ RPLVGGASIY SSSSLRSLYG VSNHLNGTDN CRYSSSLATK GVGHLARKGT GGRSSVSGIV ATVFGATGFL GRYLVQQLAK MGSQVLVPFR
101: GSEDSPRHLK LMGDLGQVVP MKFDPRDEDS IKAVMAKANV VINLIGREYE TRNFSFEDAN HHIAEKLALV AKEHGGIMRY IQVSCLGASV SSPSRMLRAK
201: AAAEEAVLNA LPEATIMRPA TMIGTEDRIL NPWSMFVKKY GFLPLIGGGT TKFQPVYVVD VAAAIVAALK DDGSSMGKTY ELGGPDVFTT HELAEIMYDM
301: IREWPRYVKL PFPIAKAMAA PRDFMVNKVP FPLPSPQIFN LDQINALTTD TLVSDNALKF QDLDLVPHKL KGYPVEFLIQ YRKGGPNFGS TVSEKIPTDF
401: YP

Arabidopsis Description

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SK66]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.