Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- mitochondrion 4
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plasma membrane:
29385242
|
msms PMID:
29385242
doi
Biosystems Engineering, Fraunhofer Institute for Factory Operation and Automation, Joseph-von-Fraunhofer-Straße 1, 39106, Magdeburg, Germany., Institute of Biology/Applied Genetics, Dahlem Centre of Plant Sciences, Free University of Berlin, Albrecht-Thaer-Weg 6, 14195, Berlin, Germany., Leibniz Institute of Plant Genetics and Crop Plant Research, Corrensstraße 3, 06466, Stadt Seeland, Gatersleben, Germany., Leibniz Institute of Vegetable and Ornamental Crops, Theodor-Echtermeyer-Weg 1, 14979, Großbeeren, Germany., Technical University of Denmark, Søltofts Plads, Building 224, 2800, Kongens Lyngby, Denmark.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G430100.1 | Wheat | nucleus | 98.06 | 97.83 |
| TraesCS6D01G374400.1 | Wheat | golgi | 97.82 | 97.82 |
| TraesCS6A01G389100.1 | Wheat | golgi, unclear | 97.82 | 97.58 |
| Os02t0816800-01 | Rice | mitochondrion | 84.99 | 86.03 |
| EES06013 | Sorghum | mitochondrion | 82.81 | 83.82 |
| Zm00001d018479_P001 | Maize | mitochondrion, plasma membrane, plastid | 68.28 | 82.46 |
| VIT_07s0005g04440.t01 | Wine grape | mitochondrion | 70.7 | 73.18 |
| GSMUA_Achr4P04460_001 | Banana | mitochondrion | 69.49 | 72.47 |
| CDY31970 | Canola | mitochondrion | 69.01 | 70.9 |
| AT2G20360.1 | Thale cress | mitochondrion | 68.52 | 70.4 |
| Solyc09g064450.2.1 | Tomato | nucleus | 68.04 | 70.07 |
| CDY39772 | Canola | mitochondrion | 68.28 | 69.98 |
| CDY03308 | Canola | mitochondrion | 68.04 | 69.9 |
| KRH19632 | Soybean | mitochondrion, nucleus | 66.83 | 64.34 |
| Bra036681.1-P | Field mustard | mitochondrion | 67.55 | 49.82 |
Protein Annotations
| EMBL:AK355389 | EMBL:AK357575 | EMBL:AK365039 | EnsemblPlants:HORVU6Hr1G090720.1 | EnsemblPlantsGene:HORVU6Hr1G090720 | Gene3D:3.40.50.720 |
| InterPro:NAD(P)-bd_dom | InterPro:NAD(P)-bd_dom_sf | PANTHER:PTHR12126 | PANTHER:PTHR12126:SF7 | PFAM:PF13460 | SEG:seg |
| SUPFAM:SSF51735 | TMHMM:TMhelix | UniParc:UPI00020048E9 | UniProt:F2CUT7 | MapMan:2.4.1.4.1.5 | : |
Description
Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2CUT7]
Coordinates
chrchr6H:+:573492912..573497540
Molecular Weight (calculated)
44702.0 Da
IEP (calculated)
9.663
GRAVY (calculated)
-0.092
Length
413 amino acids
Sequence
(BLAST)
(BLAST)
001: MQAAAAVRRH LLDQHHLSPA SSAAIAAFRS AAQPALAPQG LGGADGARYM SARAPAVKGA GHLVRKGTGG RSSVSGIVAT VFGATGFLGR YVVQQLAKMG
101: SQVLVPFRGC EDSHRHLKLM GDLGQIVPMN YNPRDVNSIK TAVAKSNVVI NLIGREYETR NYGFEEVNHQ MAEQLAMISK EHGGIVRFIQ VSALGASASS
201: PSRLLRAKAA GEESVLKEFP EATIMRPATL IGTEDRILNR WAMYAKNWGF LPLFGGGSTK FQPVYVVDVA AAIVNSLKDD GTSMGKTYEL GGPDVYTVHD
301: LAEMMYETIR EYPRYVNLPF PIAKAMASPR EMLLNKVPFP LPTPSIFNLD QIKALSVDNL VSENALTFAD LEIKPHKLKG YPTEFLVCYR KGGPSFGSTV
401: SEKMGSEDVA PRF
101: SQVLVPFRGC EDSHRHLKLM GDLGQIVPMN YNPRDVNSIK TAVAKSNVVI NLIGREYETR NYGFEEVNHQ MAEQLAMISK EHGGIVRFIQ VSALGASASS
201: PSRLLRAKAA GEESVLKEFP EATIMRPATL IGTEDRILNR WAMYAKNWGF LPLFGGGSTK FQPVYVVDVA AAIVNSLKDD GTSMGKTYEL GGPDVYTVHD
301: LAEMMYETIR EYPRYVNLPF PIAKAMASPR EMLLNKVPFP LPTPSIFNLD QIKALSVDNL VSENALTFAD LEIKPHKLKG YPTEFLVCYR KGGPSFGSTV
401: SEKMGSEDVA PRF
001: MQVVSRRLVQ RPLVGGASIY SSSSLRSLYG VSNHLNGTDN CRYSSSLATK GVGHLARKGT GGRSSVSGIV ATVFGATGFL GRYLVQQLAK MGSQVLVPFR
101: GSEDSPRHLK LMGDLGQVVP MKFDPRDEDS IKAVMAKANV VINLIGREYE TRNFSFEDAN HHIAEKLALV AKEHGGIMRY IQVSCLGASV SSPSRMLRAK
201: AAAEEAVLNA LPEATIMRPA TMIGTEDRIL NPWSMFVKKY GFLPLIGGGT TKFQPVYVVD VAAAIVAALK DDGSSMGKTY ELGGPDVFTT HELAEIMYDM
301: IREWPRYVKL PFPIAKAMAA PRDFMVNKVP FPLPSPQIFN LDQINALTTD TLVSDNALKF QDLDLVPHKL KGYPVEFLIQ YRKGGPNFGS TVSEKIPTDF
401: YP
101: GSEDSPRHLK LMGDLGQVVP MKFDPRDEDS IKAVMAKANV VINLIGREYE TRNFSFEDAN HHIAEKLALV AKEHGGIMRY IQVSCLGASV SSPSRMLRAK
201: AAAEEAVLNA LPEATIMRPA TMIGTEDRIL NPWSMFVKKY GFLPLIGGGT TKFQPVYVVD VAAAIVAALK DDGSSMGKTY ELGGPDVFTT HELAEIMYDM
301: IREWPRYVKL PFPIAKAMAA PRDFMVNKVP FPLPSPQIFN LDQINALTTD TLVSDNALKF QDLDLVPHKL KGYPVEFLIQ YRKGGPNFGS TVSEKIPTDF
401: YP
Arabidopsis Description
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SK66]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.