CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY39772	Canola	mitochondrion	99.0	98.76
CDY31970	Canola	mitochondrion	97.01	97.01
AT2G20360.1	Thale cress	mitochondrion	92.79	92.79
Zm00001d018479_P001	Maize	mitochondrion, plasma membrane, plastid	63.18	74.27
VIT_07s0005g04440.t01	Wine grape	mitochondrion	73.13	73.68
Solyc09g064450.2.1	Tomato	nucleus	71.89	72.07
GSMUA_Achr4P04460_001	Banana	mitochondrion	70.9	71.97
Os02t0816800-01	Rice	mitochondrion	70.65	69.61
Bra036681.1-P	Field mustard	mitochondrion	96.52	69.29
HORVU6Hr1G090720.1	Barley	plasma membrane	69.9	68.04
EES06013	Sorghum	mitochondrion	68.66	67.65
TraesCS6A01G389100.1	Wheat	golgi, unclear	69.65	67.63
TraesCS6B01G430100.1	Wheat	nucleus	69.65	67.63
TraesCS6D01G374400.1	Wheat	golgi	69.15	67.31
KRH19632	Soybean	mitochondrion, nucleus	71.64	67.13
Os02t0801300-01	Rice	cytosol, nucleus	7.71	21.53
Os02t0800500-02	Rice	nucleus	7.71	21.53

Protein Annotations

EnsemblPlants:CDY03308	EnsemblPlantsGene:GSBRNA2T00115883001	Gene3D:3.40.50.720	GO:A0A078EUQ0	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0050662	InterPro:NAD(P)-bd_dom	InterPro:NAD(P)-bd_dom_sf	PANTHER:PTHR12126	PANTHER:PTHR12126:SF7
PFAM:PF13460	ProteinID:CDY03308	ProteinID:CDY03308.1	SEG:seg	SUPFAM:SSF51735	UniParc:UPI0004EE3B20
MapMan:2.4.1.4.1.5	:	:	:	:	:

Description

BnaC09g10400D

Coordinates

chrLK031942:-:531972..534939

Molecular Weight (calculated)

44145.5 Da

IEP (calculated)

9.767

GRAVY (calculated)

-0.113

Length

402 amino acids

Sequence
(BLAST)

001: MQAVSRRLVQ RPLAGETSIY SSSSLRSLYG VPDYLNGSDN RRYSSSLATK GVGHLARKGT GGRSSVSGIV ATVFGATGFL GRYLVQQLAK MGSQVLVPFR
101: GSEDNPRHLK LMGDLGQVVP MKFDPRDEDS IKAVMAKANV VINLIGREYE TRNFSFEEVN HHMAEKLALV AKEHGGIMRF IQVSCLGASV SSPSRMQRAK
201: AAAEEAVFSA LPEATVMRPA TMIGTEDRIL NPWAMFVKKY GFFPLIGGGT NKFQPVYVVD VAAAIVAALK DDGSSMGKTY ELGGPDVFTP RDLAEIMFDM
301: IREWPRYVKL PFPIAKAMAG PRDFMVNKVP FPLPSPQIFN LDQINALTTD TLVSDKALTF QDLDLVPHKL KGYPVEFLIQ YRKGGPNFGS TVSEKIPTDF
401: YN

Best Arabidopsis Sequence Match ( AT2G20360.1 )
(BLAST)

001: MQVVSRRLVQ RPLVGGASIY SSSSLRSLYG VSNHLNGTDN CRYSSSLATK GVGHLARKGT GGRSSVSGIV ATVFGATGFL GRYLVQQLAK MGSQVLVPFR
101: GSEDSPRHLK LMGDLGQVVP MKFDPRDEDS IKAVMAKANV VINLIGREYE TRNFSFEDAN HHIAEKLALV AKEHGGIMRY IQVSCLGASV SSPSRMLRAK
201: AAAEEAVLNA LPEATIMRPA TMIGTEDRIL NPWSMFVKKY GFLPLIGGGT TKFQPVYVVD VAAAIVAALK DDGSSMGKTY ELGGPDVFTT HELAEIMYDM
301: IREWPRYVKL PFPIAKAMAA PRDFMVNKVP FPLPSPQIFN LDQINALTTD TLVSDNALKF QDLDLVPHKL KGYPVEFLIQ YRKGGPNFGS TVSEKIPTDF
401: YP

Arabidopsis Description

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SK66]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.