CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 6
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d018479_P001	Maize	mitochondrion, plasma membrane, plastid	80.15	95.61
Os02t0816800-01	Rice	mitochondrion	87.01	87.01
HORVU6Hr1G090720.1	Barley	plasma membrane	83.82	82.81
TraesCS6B01G430100.1	Wheat	nucleus	83.58	82.37
TraesCS6A01G389100.1	Wheat	golgi, unclear	83.33	82.13
TraesCS6D01G374400.1	Wheat	golgi	83.09	82.08
GSMUA_Achr4P04460_001	Banana	mitochondrion	72.55	74.75
VIT_07s0005g04440.t01	Wine grape	mitochondrion	72.06	73.68
Solyc09g064450.2.1	Tomato	nucleus	69.85	71.07
CDY31970	Canola	mitochondrion	68.38	69.4
AT2G20360.1	Thale cress	mitochondrion	68.14	69.15
CDY39772	Canola	mitochondrion	68.14	68.98
CDY03308	Canola	mitochondrion	67.65	68.66
KRH19632	Soybean	mitochondrion, nucleus	69.61	66.2
Bra036681.1-P	Field mustard	mitochondrion	67.4	49.11
Os02t0801300-01	Rice	cytosol, nucleus	8.09	22.92
Os02t0800500-02	Rice	nucleus	8.09	22.92

Protein Annotations

MapMan:2.4.1.4.1.5	Gene3D:3.40.50.720	EntrezGene:8055309	UniProt:C5XVW3	EnsemblPlants:EES06013	ProteinID:EES06013
ProteinID:EES06013.1	InterPro:Epimerase_deHydtase	GO:GO:0003674	GO:GO:0003824	GO:GO:0003954	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005747
GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009628	GO:GO:0009651
GO:GO:0009987	GO:GO:0016020	GO:GO:0050662	GO:GO:0055114	GO:GO:1901006	InterPro:NAD(P)-bd_dom_sf
PFAM:PF01370	PANTHER:PTHR12126	PANTHER:PTHR12126:SF7	EnsemblPlantsGene:SORBI_3004G344800	SUPFAM:SSF51735	unigene:Sbi.1422
UniParc:UPI0001A85C40	RefSeq:XP_002453037.1	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:67477686..67481980

Molecular Weight (calculated)

44548.0 Da

IEP (calculated)

9.359

GRAVY (calculated)

-0.098

Length

408 amino acids

Sequence
(BLAST)

001: MQAAAWRRHL LDHHLSPSTS AAIAAFRSAS QPGLAPQGLC GADGARYMSS ARAPAVKGSG HLVRKGTGGR SSVSGIVATV FGATGFLGRY LVQQLAKMGS
101: QVLVPFRGCE DSHRHLKIMG DLGQIVPMKY HPRDVDSIKA VMAKSNVVIN LIGREYETRN YSFEEVNHHM AEQLATIAKE HGGIMRFIQV SCLGASPSSE
201: SRLLRTKAAG EQSILKEFPE ATIMRPATMI GTEDRILNRW AQFAKNWGFL PLVGGGSTKI QPVYVIDVAA AIVNSLKDDG TSMGKIYELG GPEIYTVHEL
301: AELMYETIRE WPRYVNVPLP VARAIASPRE MLLNKVPFPL PTPSIFNLDQ INAFAVDNLV SEDALTFEDL GIMPQKLKGY PVEFLVSYRK GGPSFGSTVS
401: EKMRSSEM

Best Arabidopsis Sequence Match ( AT2G20360.1 )
(BLAST)

001: MQVVSRRLVQ RPLVGGASIY SSSSLRSLYG VSNHLNGTDN CRYSSSLATK GVGHLARKGT GGRSSVSGIV ATVFGATGFL GRYLVQQLAK MGSQVLVPFR
101: GSEDSPRHLK LMGDLGQVVP MKFDPRDEDS IKAVMAKANV VINLIGREYE TRNFSFEDAN HHIAEKLALV AKEHGGIMRY IQVSCLGASV SSPSRMLRAK
201: AAAEEAVLNA LPEATIMRPA TMIGTEDRIL NPWSMFVKKY GFLPLIGGGT TKFQPVYVVD VAAAIVAALK DDGSSMGKTY ELGGPDVFTT HELAEIMYDM
301: IREWPRYVKL PFPIAKAMAA PRDFMVNKVP FPLPSPQIFN LDQINALTTD TLVSDNALKF QDLDLVPHKL KGYPVEFLIQ YRKGGPNFGS TVSEKIPTDF
401: YP

Arabidopsis Description

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SK66]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.