Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 5
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
26228564
|
msms PMID:
26228564
doi
Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G389100.1 | Wheat | golgi, unclear | 99.52 | 99.52 |
| TraesCS6D01G374400.1 | Wheat | golgi | 98.55 | 98.79 |
| HORVU6Hr1G090720.1 | Barley | plasma membrane | 97.83 | 98.06 |
| Os02t0816800-01 | Rice | mitochondrion | 83.82 | 85.05 |
| EES06013 | Sorghum | mitochondrion | 82.37 | 83.58 |
| Zm00001d018479_P001 | Maize | mitochondrion, plasma membrane, plastid | 67.87 | 82.16 |
| VIT_07s0005g04440.t01 | Wine grape | mitochondrion | 70.29 | 72.93 |
| GSMUA_Achr4P04460_001 | Banana | mitochondrion | 68.6 | 71.72 |
| CDY31970 | Canola | mitochondrion | 68.6 | 70.65 |
| CDY39772 | Canola | mitochondrion | 68.36 | 70.22 |
| Solyc09g064450.2.1 | Tomato | nucleus | 67.87 | 70.07 |
| AT2G20360.1 | Thale cress | mitochondrion | 67.87 | 69.9 |
| CDY03308 | Canola | mitochondrion | 67.63 | 69.65 |
| KRH19632 | Soybean | mitochondrion, nucleus | 67.15 | 64.8 |
| Bra036681.1-P | Field mustard | mitochondrion | 67.63 | 50.0 |
Protein Annotations
| EnsemblPlants:TraesCS6B01G430100.1 | EnsemblPlantsGene:TraesCS6B01G430100 | Gene3D:3.40.50.720 | InterPro:NAD(P)-bd_dom | InterPro:NAD(P)-bd_dom_sf | PANTHER:PTHR12126 |
| PANTHER:PTHR12126:SF7 | PFAM:PF13460 | SEG:seg | SUPFAM:SSF51735 | TIGR:cd05271 | TMHMM:TMhelix |
| MapMan:2.4.1.4.1.5 | : | : | : | : | : |
Description
No Description!
Coordinates
chr6B:+:697760517..697764266
Molecular Weight (calculated)
44685.0 Da
IEP (calculated)
9.788
GRAVY (calculated)
-0.070
Length
414 amino acids
Sequence
(BLAST)
(BLAST)
001: MQAAAAAARR HLLDQHHLSP ASSAAIAAFR SAAQPALAPQ GLGGADGARY MSARAPAVKG AGHLVRKGTG GRSSVSGIVA TVFGATGFLG RYVVQQLAKM
101: GSQVLVPFRG CEDSHRHLKL MGDLGQIVPM NYNPRDVNSI KTAVAKSNVV INLIGREYET RNYGFEEVNH QMAEQLAMIS KEHGGIVRFI QVSALGASAS
201: SPSRLLRAKA AGEESVLKEF PEATIMRPAT LIGTEDRILN RWAMYAKNWG FLPLFGGGST KFQPVYVVDV AAAIVNSLKD DGTSMGKTYE LGGPDIYTVH
301: DLAEMMFETI REYPRYVNLP FPIAKAMASP REMLLNKVPF PLPTPSIFNL DQIKALTVDN LVSENALSFA DLEIKPHKLK GYPTEFLVCY RKGGPSFGST
401: VSEKMGSADV APRF
101: GSQVLVPFRG CEDSHRHLKL MGDLGQIVPM NYNPRDVNSI KTAVAKSNVV INLIGREYET RNYGFEEVNH QMAEQLAMIS KEHGGIVRFI QVSALGASAS
201: SPSRLLRAKA AGEESVLKEF PEATIMRPAT LIGTEDRILN RWAMYAKNWG FLPLFGGGST KFQPVYVVDV AAAIVNSLKD DGTSMGKTYE LGGPDIYTVH
301: DLAEMMFETI REYPRYVNLP FPIAKAMASP REMLLNKVPF PLPTPSIFNL DQIKALTVDN LVSENALSFA DLEIKPHKLK GYPTEFLVCY RKGGPSFGST
401: VSEKMGSADV APRF
001: MQVVSRRLVQ RPLVGGASIY SSSSLRSLYG VSNHLNGTDN CRYSSSLATK GVGHLARKGT GGRSSVSGIV ATVFGATGFL GRYLVQQLAK MGSQVLVPFR
101: GSEDSPRHLK LMGDLGQVVP MKFDPRDEDS IKAVMAKANV VINLIGREYE TRNFSFEDAN HHIAEKLALV AKEHGGIMRY IQVSCLGASV SSPSRMLRAK
201: AAAEEAVLNA LPEATIMRPA TMIGTEDRIL NPWSMFVKKY GFLPLIGGGT TKFQPVYVVD VAAAIVAALK DDGSSMGKTY ELGGPDVFTT HELAEIMYDM
301: IREWPRYVKL PFPIAKAMAA PRDFMVNKVP FPLPSPQIFN LDQINALTTD TLVSDNALKF QDLDLVPHKL KGYPVEFLIQ YRKGGPNFGS TVSEKIPTDF
401: YP
101: GSEDSPRHLK LMGDLGQVVP MKFDPRDEDS IKAVMAKANV VINLIGREYE TRNFSFEDAN HHIAEKLALV AKEHGGIMRY IQVSCLGASV SSPSRMLRAK
201: AAAEEAVLNA LPEATIMRPA TMIGTEDRIL NPWSMFVKKY GFLPLIGGGT TKFQPVYVVD VAAAIVAALK DDGSSMGKTY ELGGPDVFTT HELAEIMYDM
301: IREWPRYVKL PFPIAKAMAA PRDFMVNKVP FPLPSPQIFN LDQINALTTD TLVSDNALKF QDLDLVPHKL KGYPVEFLIQ YRKGGPNFGS TVSEKIPTDF
401: YP
Arabidopsis Description
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SK66]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.