CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY39772	Canola	mitochondrion	97.51	97.27
CDY03308	Canola	mitochondrion	97.01	97.01
AT2G20360.1	Thale cress	mitochondrion	93.78	93.78
Zm00001d018479_P001	Maize	mitochondrion, plasma membrane, plastid	63.43	74.56
VIT_07s0005g04440.t01	Wine grape	mitochondrion	73.88	74.44
GSMUA_Achr4P04460_001	Banana	mitochondrion	71.64	72.73
Solyc09g064450.2.1	Tomato	nucleus	72.14	72.32
Os02t0816800-01	Rice	mitochondrion	71.14	70.1
HORVU6Hr1G090720.1	Barley	plasma membrane	70.9	69.01
TraesCS6A01G389100.1	Wheat	golgi, unclear	70.65	68.6
TraesCS6B01G430100.1	Wheat	nucleus	70.65	68.6
EES06013	Sorghum	mitochondrion	69.4	68.38
TraesCS6D01G374400.1	Wheat	golgi	70.15	68.28
Bra036681.1-P	Field mustard	mitochondrion	95.02	68.21
KRH19632	Soybean	mitochondrion, nucleus	72.39	67.83
Os02t0801300-01	Rice	cytosol, nucleus	7.71	21.53
Os02t0800500-02	Rice	nucleus	7.71	21.53

Protein Annotations

EnsemblPlants:CDY31970	EnsemblPlantsGene:GSBRNA2T00050765001	Gene3D:3.40.50.720	GO:A0A078GZW1	InterPro:NAD(P)-bd_dom	InterPro:NAD(P)-bd_dom_sf
PANTHER:PTHR12126	PANTHER:PTHR12126:SF7	PFAM:PF13460	ProteinID:CDY31970	ProteinID:CDY31970.1	SEG:seg
SUPFAM:SSF51735	UniParc:UPI0004EE871E	UniProt:A0A078GZW1	MapMan:2.4.1.4.1.5	:	:

Description

BnaA07g00250DBnaA07g00250D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GZW1]

Coordinates

chrLK032283:-:223981..227013

Molecular Weight (calculated)

43909.1 Da

IEP (calculated)

9.624

GRAVY (calculated)

-0.117

Length

402 amino acids

Sequence
(BLAST)

001: MQAVSRRLIQ RPLSGGASIY SSSSPRSLHG VSDHLNGSDN RRYSSSLATK GVGHLARKGT GGRSSVSGIV ATVFGATGFL GRYLVQQLAK MGSQVLVPFR
101: GSEDNPRHLK LMGDLGQVVP MKFDPRDEDS IKAVMAKANV VINLIGREYE TRNFSFEEVN HHMAEKLALV AKEHGGIMRF IQVSCLGASV SSPSRMQRAK
201: AAAEEAVLSA LPEATVMRPA TMIGTEDRIL NPWAMFVKKY GFLPLIGGGT NKFQPVYVVD VAAAIVAALK DDGSSMGKTY ELGGPDVFTP HDLAEIMFDM
301: IREWPRYVKL PFPIAKAMAG PRDFMVNKVP FPLPSPQIFN LDQINALTTD TLVSDEALTF QDLDLVPHKL KGYPVEFLIQ YRKGGPNFGS TVSEKIPTDF
401: YN

Best Arabidopsis Sequence Match ( AT2G20360.1 )
(BLAST)

001: MQVVSRRLVQ RPLVGGASIY SSSSLRSLYG VSNHLNGTDN CRYSSSLATK GVGHLARKGT GGRSSVSGIV ATVFGATGFL GRYLVQQLAK MGSQVLVPFR
101: GSEDSPRHLK LMGDLGQVVP MKFDPRDEDS IKAVMAKANV VINLIGREYE TRNFSFEDAN HHIAEKLALV AKEHGGIMRY IQVSCLGASV SSPSRMLRAK
201: AAAEEAVLNA LPEATIMRPA TMIGTEDRIL NPWSMFVKKY GFLPLIGGGT TKFQPVYVVD VAAAIVAALK DDGSSMGKTY ELGGPDVFTT HELAEIMYDM
301: IREWPRYVKL PFPIAKAMAA PRDFMVNKVP FPLPSPQIFN LDQINALTTD TLVSDNALKF QDLDLVPHKL KGYPVEFLIQ YRKGGPNFGS TVSEKIPTDF
401: YP

Arabidopsis Description

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SK66]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.