Factsheet for GSMUA_Achr4P04460_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 7
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_07s0005g04440.t01	Wine grape	mitochondrion	81.06	80.45
Zm00001d018479_P001	Maize	mitochondrion, plasma membrane, plastid	67.93	78.66
Os02t0816800-01	Rice	mitochondrion	75.51	73.28
Solyc09g064450.2.1	Tomato	nucleus	73.74	72.82
EES06013	Sorghum	mitochondrion	74.75	72.55
AT2G20360.1	Thale cress	mitochondrion	72.73	71.64
CDY31970	Canola	mitochondrion	72.73	71.64
CDY39772	Canola	mitochondrion	72.73	71.46
CDY03308	Canola	mitochondrion	71.97	70.9
KRH19632	Soybean	mitochondrion, nucleus	75.76	69.93
HORVU6Hr1G090720.1	Barley	plasma membrane	72.47	69.49
TraesCS6D01G374400.1	Wheat	golgi	71.72	68.77
TraesCS6A01G389100.1	Wheat	golgi, unclear	71.72	68.6
TraesCS6B01G430100.1	Wheat	nucleus	71.72	68.6
Bra036681.1-P	Field mustard	mitochondrion	71.97	50.89
Os02t0801300-01	Rice	cytosol, nucleus	7.83	21.53
Os02t0800500-02	Rice	nucleus	7.83	21.53

Protein Annotations

MapMan:2.4.1.4.1.5	Gene3D:3.40.50.720	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0005747	GO:GO:0006950	GO:GO:0008150	GO:GO:0009628	GO:GO:0009651
GO:GO:0016020	GO:GO:0016021	EnsemblPlantsGene:GSMUA_Achr4G04460_001	EnsemblPlants:GSMUA_Achr4P04460_001	EnsemblPlants:GSMUA_Achr4T04460_001	UniProt:M0SL13
InterPro:NAD(P)-bd_dom_sf	InterPro:NmrA-like	PFAM:PF05368	PANTHER:PTHR12126	PANTHER:PTHR12126:SF7	SUPFAM:SSF51735
TMHMM:TMhelix	UniParc:UPI000294C4AE	:	:	:	:

Description

Putative NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr4G04460_001]

Coordinates

chr4:-:3520699..3529288

Molecular Weight (calculated)

43613.0 Da

IEP (calculated)

9.969

GRAVY (calculated)

-0.117

Length

396 amino acids

Sequence
(BLAST)

001: MQAGWRRSGR RFLEQSPALS TLKSIYPLSS SECGVDRPRY GSTVAVKGTG HLIRKGTGGR SSVSGIVATV FGATGFLGRY VVSQLAKMGS QVLVPFRGSE
101: DSHRHLKLMG DLGQIVPMKY NPRDENSIKA VMAKSNVVFN LIGREYETRN YSFEEVNHAM AEQLAVIAKE HGGIMRFVQV SCLGASSSSP SRMLRAKAAA
201: EEAVLRQFPE ATIMKPGIMI GTEDRILNRW AQFAKKWSFL PLIGDGSTKI QPVYVIDVAA AIMASLKDDG SSMGKVYELG GPEVYTLHQL AELMYDMIRE
301: WPRYVKIPFP IAKAIATPRE LLLKKVPFPL PNPDIFNLDQ INSFTVDTVV SDNALTFKDL GIVPHKLKGY PVEYLISYRK GGPSFGSTVS ERVTAE

Best Arabidopsis Sequence Match ( AT2G20360.1 )
(BLAST)

001: MQVVSRRLVQ RPLVGGASIY SSSSLRSLYG VSNHLNGTDN CRYSSSLATK GVGHLARKGT GGRSSVSGIV ATVFGATGFL GRYLVQQLAK MGSQVLVPFR
101: GSEDSPRHLK LMGDLGQVVP MKFDPRDEDS IKAVMAKANV VINLIGREYE TRNFSFEDAN HHIAEKLALV AKEHGGIMRY IQVSCLGASV SSPSRMLRAK
201: AAAEEAVLNA LPEATIMRPA TMIGTEDRIL NPWSMFVKKY GFLPLIGGGT TKFQPVYVVD VAAAIVAALK DDGSSMGKTY ELGGPDVFTT HELAEIMYDM
301: IREWPRYVKL PFPIAKAMAA PRDFMVNKVP FPLPSPQIFN LDQINALTTD TLVSDNALKF QDLDLVPHKL KGYPVEFLIQ YRKGGPNFGS TVSEKIPTDF
401: YP

Arabidopsis Description

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SK66]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.