Factsheet for VIT_07s0005g04440.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 7
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P04460_001	Banana	mitochondrion	80.45	81.06
Zm00001d018479_P001	Maize	mitochondrion, plasma membrane, plastid	67.17	78.36
KRH19632	Soybean	mitochondrion, nucleus	83.46	77.62
Solyc09g064450.2.1	Tomato	nucleus	76.69	76.31
AT2G20360.1	Thale cress	mitochondrion	74.69	74.13
CDY31970	Canola	mitochondrion	74.44	73.88
CDY39772	Canola	mitochondrion	74.19	73.45
Os02t0816800-01	Rice	mitochondrion	74.94	73.28
CDY03308	Canola	mitochondrion	73.68	73.13
EES06013	Sorghum	mitochondrion	73.68	72.06
HORVU6Hr1G090720.1	Barley	plasma membrane	73.18	70.7
TraesCS6D01G374400.1	Wheat	golgi	72.93	70.46
TraesCS6A01G389100.1	Wheat	golgi, unclear	72.93	70.29
TraesCS6B01G430100.1	Wheat	nucleus	72.93	70.29
Bra036681.1-P	Field mustard	mitochondrion	73.43	52.32
Os02t0800500-02	Rice	nucleus	7.77	21.53
Os02t0801300-01	Rice	cytosol, nucleus	7.77	21.53

Protein Annotations

EntrezGene:100242849	wikigene:100242849	MapMan:2.4.1.4.1.5	Gene3D:3.40.50.720	ProteinID:CBI37199	ProteinID:CBI37199.3
UniProt:D7U382	InterPro:Epimerase_deHydtase	EMBL:FN596502	GO:GO:0003674	GO:GO:0003824	GO:GO:0003954
GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0050662
GO:GO:0055114	GO:GO:1901006	EntrezGene:LOC100242849	wikigene:LOC100242849	InterPro:NAD(P)-bd_dom_sf	PFAM:PF01370
PANTHER:PTHR12126	PANTHER:PTHR12126:SF7	SUPFAM:SSF51735	TIGR:TC62713	UniParc:UPI00015CA622	ArrayExpress:VIT_07s0005g04440
EnsemblPlantsGene:VIT_07s0005g04440	EnsemblPlants:VIT_07s0005g04440.t01	unigene:Vvi.4198	RefSeq:XP_002271401	RefSeq:XP_002271401.1	:

Description

No Description!

Coordinates

chr7:-:7509292..7518309

Molecular Weight (calculated)

43933.5 Da

IEP (calculated)

9.392

GRAVY (calculated)

-0.075

Length

399 amino acids

Sequence
(BLAST)

001: MQALSRRLGH QSFNQSPAIS SLKSIYPLSD HYYGADHPRL GSTLAPKGVG HLVRKGTGGR SSVSGIVAVV FGATGFLGRY VVQQLAKMGS QVLVPFRGSE
101: DSHRHLKLMG DLGQIVPMKY NPRDENSIKA VMAKANVVLN LIGREYETRN YSFEEVNHHM AEQLAMISKE HGGIMRFIQV SCLGASPSSP SRMLMAKAAA
201: EEAVLRELPE ATIMRPAVMI GTEDRILNRW AQFAKKYGFL PLYGDGSTKF QPVYVIDVAA AIMAALKDDG TSMGKVYELG GPEIFTMHEL AAVMYDTIRE
301: WPRYVKVPFP IAKAMTLPRE ILLNKVPFPL PTPGLFNLDL INAFTSDTVV SENALTFDDL GIVPHKLKGY PIEFLLSYRK GGPQFGSTIS ERVDPEAFP

Best Arabidopsis Sequence Match ( AT2G20360.1 )
(BLAST)

001: MQVVSRRLVQ RPLVGGASIY SSSSLRSLYG VSNHLNGTDN CRYSSSLATK GVGHLARKGT GGRSSVSGIV ATVFGATGFL GRYLVQQLAK MGSQVLVPFR
101: GSEDSPRHLK LMGDLGQVVP MKFDPRDEDS IKAVMAKANV VINLIGREYE TRNFSFEDAN HHIAEKLALV AKEHGGIMRY IQVSCLGASV SSPSRMLRAK
201: AAAEEAVLNA LPEATIMRPA TMIGTEDRIL NPWSMFVKKY GFLPLIGGGT TKFQPVYVVD VAAAIVAALK DDGSSMGKTY ELGGPDVFTT HELAEIMYDM
301: IREWPRYVKL PFPIAKAMAA PRDFMVNKVP FPLPSPQIFN LDQINALTTD TLVSDNALKF QDLDLVPHKL KGYPVEFLIQ YRKGGPNFGS TVSEKIPTDF
401: YP

Arabidopsis Description

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SK66]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.