CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

plastid 1
mitochondrion 9

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH58129	Soybean	mitochondrion	95.89	95.89
Solyc02g092270.2.1	Tomato	plastid	44.52	85.53
VIT_07s0151g00140.t01	Wine grape	cytosol	35.62	78.79
VIT_07s0151g00490.t01	Wine grape	mitochondrion	78.77	74.68
CDY18667	Canola	mitochondrion	73.29	69.48
Bra024437.1-P	Field mustard	mitochondrion	71.92	68.63
CDY08730	Canola	mitochondrion	71.92	68.63
CDX81305	Canola	mitochondrion	71.92	68.63
TraesCS2D01G196100.1	Wheat	mitochondrion	73.97	68.35
TraesCS2B01G215200.1	Wheat	mitochondrion	73.97	68.35
TraesCS2A01G191500.1	Wheat	mitochondrion	73.97	68.35
AT5G67590.1	Thale cress	mitochondrion	71.92	68.18
EER99617	Sorghum	mitochondrion	73.29	68.15
CDY36505	Canola	mitochondrion	69.18	67.33
Zm00001d006714_P001	Maize	mitochondrion	71.92	66.88
Os07t0585800-01	Rice	mitochondrion	72.6	66.67
GSMUA_AchrUn_...	Banana	mitochondrion	71.23	65.82
GSMUA_Achr8P31080_001	Banana	mitochondrion	71.23	63.8
CDX87559	Canola	mitochondrion	60.27	60.27
Bra037836.1-P	Field mustard	mitochondrion	36.3	56.38
HORVU2Hr1G035860.1	Barley	mitochondrion	73.97	55.96
VIT_00s1311g00010.t01	Wine grape	mitochondrion	42.47	52.54
PGSC0003DMT400055230	Potato	mitochondrion	19.18	50.0
Zm00001d021958_P002	Maize	mitochondrion	60.96	41.01

Protein Annotations

MapMan:2.4.1.4.3	Gene3D:3.30.160.190	EMBL:ACUP02010415	ncoils:Coil	EnsemblPlantsGene:GLYMA_17G160400	GO:GO:0003674
GO:GO:0003824	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016651
GO:GO:0022900	UniProt:I1MVK7	InterPro:IPR038532	EnsemblPlants:KRH04413	ProteinID:KRH04413	ProteinID:KRH04413.1
InterPro:NADH_UbQ_FeS_4_mit	InterPro:NDUFS4-like_sf	PFAM:PF04800	PANTHER:PTHR12219	PANTHER:PTHR12219:SF8	UniParc:UPI00023D5DAB

Description

hypothetical protein

Coordinates

chr17:-:13914956..13919712

Molecular Weight (calculated)

16277.4 Da

IEP (calculated)

10.468

GRAVY (calculated)

-0.671

Length

146 amino acids

Sequence
(BLAST)

001: MANTLQRALR ATMARPFSTG ALAEIKRGEI GMVSGIPEEH LRRRVLIYSP ARTASQQGSG KVGRWKINFL STQKWENPLM GWTSTGDPYS HVGDSALTFD
101: SEQAAKAFAE KHGWEYSVKK PHTPLLKVKS YADNFKWKGP PKSGEE

Best Arabidopsis Sequence Match ( AT5G67590.1 )
(BLAST)

001: MALCATTQRT IRIAATLRRV ARPFATDAVV ESDYKRGEIG KVSGIPEEHL SRKVIIYSPA RTATQSGSGK LGKWKINFVS TLKWENPLMG WTSTGDPYAN
101: VGDSALAFDS EEAAKSFAER HGWDYKVKKP NTPLLKVKSY SDNFKWKGNP QPEN

Arabidopsis Description

FRO1NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FJW4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.