CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 8

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218
mitochondrion: 27780359
nucleus: 28499913

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH04413	Soybean	endoplasmic reticulum	95.89	95.89
Solyc02g092270.2.1	Tomato	plastid	45.21	86.84
VIT_07s0151g00140.t01	Wine grape	cytosol	36.3	80.3
VIT_07s0151g00490.t01	Wine grape	mitochondrion	78.77	74.68
CDY18667	Canola	mitochondrion	73.29	69.48
AT5G67590.1	Thale cress	mitochondrion	72.6	68.83
Bra024437.1-P	Field mustard	mitochondrion	71.92	68.63
CDY08730	Canola	mitochondrion	71.92	68.63
CDX81305	Canola	mitochondrion	71.92	68.63
CDY36505	Canola	mitochondrion	69.86	68.0
GSMUA_AchrUn_...	Banana	mitochondrion	73.29	67.72
TraesCS2A01G191500.1	Wheat	mitochondrion	73.29	67.72
TraesCS2B01G215200.1	Wheat	mitochondrion	73.29	67.72
TraesCS2D01G196100.1	Wheat	mitochondrion	73.29	67.72
EER99617	Sorghum	mitochondrion	72.6	67.52
Zm00001d006714_P001	Maize	mitochondrion	72.6	67.52
Os07t0585800-01	Rice	mitochondrion	72.6	66.67
GSMUA_Achr8P31080_001	Banana	mitochondrion	73.97	66.26
CDX87559	Canola	mitochondrion	60.27	60.27
Bra037836.1-P	Field mustard	mitochondrion	36.3	56.38
HORVU2Hr1G035860.1	Barley	mitochondrion	73.29	55.44
VIT_00s1311g00010.t01	Wine grape	mitochondrion	41.78	51.69
PGSC0003DMT400055230	Potato	mitochondrion	19.18	50.0
Zm00001d021958_P002	Maize	mitochondrion	60.27	40.55

Protein Annotations

EntrezGene:100526873	MapMan:2.4.1.4.3	Gene3D:3.30.160.190	EMBL:ACUP02003201	EMBL:BT091674	UniProt:C6T2L5
EnsemblPlantsGene:GLYMA_05G106100	GO:GO:0003674	GO:GO:0003824	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016651	GO:GO:0022900	InterPro:IPR038532	EnsemblPlants:KRH58129	ProteinID:KRH58129
ProteinID:KRH58129.1	InterPro:NADH_UbQ_FeS_4_mit	InterPro:NDUFS4-like_sf	PFAM:PF04800	PANTHER:PTHR12219	PANTHER:PTHR12219:SF8
UniParc:UPI0001B15112	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr5:+:28170704..28175400

Molecular Weight (calculated)

16352.4 Da

IEP (calculated)

10.433

GRAVY (calculated)

-0.705

Length

146 amino acids

Sequence
(BLAST)

001: MANTLQRALR ATMARRFSTD ALAEIKRGEI GMVSGIPQEH LRRRVVIYSP ARTASQQGSG KVGKWKINFL STQKWENPLM GWTSTGDPYS HVGDSALTFD
101: SEEAAKAFAE KHGWEYSVKK PHTPLLKVKS YADNFKWKGP PKSGEE

Best Arabidopsis Sequence Match ( AT5G67590.1 )
(BLAST)

001: MALCATTQRT IRIAATLRRV ARPFATDAVV ESDYKRGEIG KVSGIPEEHL SRKVIIYSPA RTATQSGSGK LGKWKINFVS TLKWENPLMG WTSTGDPYAN
101: VGDSALAFDS EEAAKSFAER HGWDYKVKKP NTPLLKVKSY SDNFKWKGNP QPEN

Arabidopsis Description

FRO1NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FJW4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.