Factsheet for Zm00001d021958_P002

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 6
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER99617	Sorghum	mitochondrion	59.45	82.17
Zm00001d006714_P001	Maize	mitochondrion	57.6	79.62
TraesCS2D01G196100.1	Wheat	mitochondrion	56.68	77.85
TraesCS2B01G215200.1	Wheat	mitochondrion	56.68	77.85
TraesCS2A01G191500.1	Wheat	mitochondrion	56.68	77.85
Os07t0585800-01	Rice	mitochondrion	55.76	76.1
HORVU2Hr1G035860.1	Barley	mitochondrion	55.76	62.69
VIT_07s0151g00490.t01	Wine grape	mitochondrion	43.32	61.04
KRH04413	Soybean	endoplasmic reticulum	41.01	60.96
KRH58129	Soybean	mitochondrion	40.55	60.27
GSMUA_AchrUn_...	Banana	mitochondrion	43.78	60.13
PGSC0003DMT400055230	Potato	mitochondrion	14.75	57.14
GSMUA_Achr8P31080_001	Banana	mitochondrion	42.86	57.06
CDX87559	Canola	mitochondrion	38.25	56.85
Bra037836.1-P	Field mustard	mitochondrion	23.96	55.32
CDY18667	Canola	mitochondrion	38.25	53.9
CDY08730	Canola	mitochondrion	37.33	52.94
Bra024437.1-P	Field mustard	mitochondrion	37.33	52.94
CDY36505	Canola	mitochondrion	36.41	52.67
AT5G67590.1	Thale cress	mitochondrion	37.33	52.6
CDX81305	Canola	mitochondrion	36.41	51.63
VIT_00s1311g00010.t01	Wine grape	mitochondrion	27.65	50.85
Solyc02g092270.2.1	Tomato	plastid	17.51	50.0
VIT_07s0151g00140.t01	Wine grape	cytosol	14.75	48.48

Protein Annotations

EnsemblPlants:Zm00001d021958_P002	EnsemblPlants:Zm00001d021958_T002	EnsemblPlantsGene:Zm00001d021958	EntrezGene:100281028	Gene3D:3.30.160.190	GO:GO:0003674
GO:GO:0003824	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016651
GO:GO:0022900	InterPro:IPR038532	InterPro:NADH_UbQ_FeS_4_mit	InterPro:NDUFS4-like_sf	PANTHER:PTHR12219	PANTHER:PTHR12219:SF8
PFAM:PF04800	ProteinID:ONM59161.1	UniParc:UPI000843AAB1	UniProt:A0A1D6II42	MapMan:2.4.1.4.3	:

Description

NADH-ubiquinone oxidoreductase 18 kDa subunit

Coordinates

chr7:-:167117031..167124073

Molecular Weight (calculated)

23890.0 Da

IEP (calculated)

7.304

GRAVY (calculated)

0.143

Length

217 amino acids

Sequence
(BLAST)

001: MAAPLRRSLP SLGRALLTPA PARMLSAEAS DALVEIKPGE IGMVSGIPEE HLRRKVTCCI LLSRVFSCQM VDGVDDCGRL QRDTFWSQYG HTGSWDWIVV
101: LDVIGEWASL CLLLQVFVMK MGSFFFTTGQ LILVSCQVLI YSPARTASQQ GSGKVGRWKI NFLSTQKWEN PLMGWTSTGD PYANVGEAGL TFDSAESAKA
201: FAEKHGWNYV VGLLFSM

Best Arabidopsis Sequence Match ( AT5G67590.1 )
(BLAST)

001: MALCATTQRT IRIAATLRRV ARPFATDAVV ESDYKRGEIG KVSGIPEEHL SRKVIIYSPA RTATQSGSGK LGKWKINFVS TLKWENPLMG WTSTGDPYAN
101: VGDSALAFDS EEAAKSFAER HGWDYKVKKP NTPLLKVKSY SDNFKWKGNP QPEN

Arabidopsis Description

FRO1NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FJW4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.