CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1
plastid 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, peroxisome, plastid, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	extracellular
YLoc:	peroxisome

mitochondrion: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH36573	Soybean	cytosol, extracellular, peroxisome	100.0	100.0
VIT_19s0090g01760.t01	Wine grape	cytosol	90.1	91.0
GSMUA_Achr5P24540_001	Banana	cytosol	88.12	88.12
EES13880	Sorghum	cytosol	88.12	87.25
Zm00001d050384_P001	Maize	mitochondrion	88.12	86.41
PGSC0003DMT400057110	Potato	cytosol	87.13	86.27
Solyc07g065280.2.1	Tomato	cytosol, nucleus, unclear	87.13	86.27
GSMUA_Achr3P07340_001	Banana	cytosol	84.16	85.86
TraesCS2D01G159600.1	Wheat	golgi, unclear	85.15	84.31
TraesCS2B01G179400.1	Wheat	cytosol	85.15	84.31
TraesCS2A01G154100.1	Wheat	cytosol	85.15	84.31
TraesCS6B01G101700.1	Wheat	cytosol	84.16	83.33
CDY32249	Canola	cytosol, extracellular, peroxisome	85.15	81.13
CDY62425	Canola	cytosol, extracellular, peroxisome	85.15	81.13
AT4G16450.1	Thale cress	cytosol	84.16	80.19
Bra012716.1-P	Field mustard	cytosol, extracellular, peroxisome	84.16	79.44
CDY09691	Canola	cytosol, extracellular, peroxisome	84.16	79.44
CDX90521	Canola	cytosol, extracellular, peroxisome	84.16	79.44
Bra038466.1-P	Field mustard	cytosol, extracellular, peroxisome	85.15	67.19
Os08t0431500-01	Rice	mitochondrion	89.11	65.22
TraesCS6A01G076300.1	Wheat	cytosol, nucleus, peroxisome	86.14	60.84
HORVU2Hr1G027860.1	Barley	mitochondrion	84.16	48.85
HORVU6Hr1G013470.1	Barley	peroxisome	47.52	45.28

Protein Annotations

KEGG:00190+1.6.99.3+1.6.5.3	EntrezGene:100306111	EntrezGene:100819728	MapMan:35.2	EMBL:ACUP02005382	EMBL:ACUP02009215
EMBL:BT090061	UniProt:C6SY14	EnsemblPlantsGene:GLYMA_15G116500	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
EnsemblPlants:KRH11550	ProteinID:KRH11550	ProteinID:KRH11550.1	ProteinID:KRH36573.1	InterPro:NADH-UbQ_OxRdtase_su21_N	PFAM:PF10785
PANTHER:PTHR34062	MetaCyc:PWY-3781	MetaCyc:PWY-4302	MetaCyc:PWY-5083	MetaCyc:PWY-6692	TMHMM:TMhelix
UniParc:UPI0001B1559E	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr15:-:9160515..9161398

Molecular Weight (calculated)

11006.3 Da

IEP (calculated)

9.697

GRAVY (calculated)

-0.074

Length

101 amino acids

Sequence
(BLAST)

001: MNTDITASTK PEYPVIDRNP PFTKVVGNFN TLDYLRFVTI TGVSVTVGYL SGIKPGIRGP SMVTGGLIGV MGGFMYAYQN SAGRLMGFFP NDDEVARYNK
101: K

Best Arabidopsis Sequence Match ( AT4G16450.1 )
(BLAST)

001: MNTDITALEK AQYPVVDRNP AFTKVVGNFS TLDYLRFSTI TGISVTVGYL SGIKPGIKGP SMVTGGLIGL MGGFMYAYQN SAGRLMGFFP NDGEVASYQK
101: RGGFSK

Arabidopsis Description

At4g16450 [Source:UniProtKB/TrEMBL;Acc:Q84W12]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.