Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G154100.1 | Wheat | cytosol | 67.13 | 94.12 |
| TraesCS6B01G101700.1 | Wheat | cytosol | 66.43 | 93.14 |
| EES13880 | Sorghum | cytosol | 64.34 | 90.2 |
| Zm00001d050384_P001 | Maize | mitochondrion | 63.64 | 88.35 |
| GSMUA_Achr5P24540_001 | Banana | cytosol | 62.24 | 88.12 |
| KRH11550 | Soybean | mitochondrion | 60.84 | 86.14 |
| KRH36573 | Soybean | cytosol, extracellular, peroxisome | 60.84 | 86.14 |
| Solyc07g065280.2.1 | Tomato | cytosol, nucleus, unclear | 60.84 | 85.29 |
| PGSC0003DMT400057110 | Potato | cytosol | 60.84 | 85.29 |
| VIT_19s0090g01760.t01 | Wine grape | cytosol | 59.44 | 85.0 |
| CDY32249 | Canola | cytosol, extracellular, peroxisome | 58.74 | 79.25 |
| CDY62425 | Canola | cytosol, extracellular, peroxisome | 58.74 | 79.25 |
| Bra012716.1-P | Field mustard | cytosol, extracellular, peroxisome | 58.74 | 78.5 |
| CDY09691 | Canola | cytosol, extracellular, peroxisome | 58.74 | 78.5 |
| CDX90521 | Canola | cytosol, extracellular, peroxisome | 58.74 | 78.5 |
| AT4G16450.1 | Thale cress | cytosol | 56.64 | 76.42 |
| Os08t0431500-01 | Rice | mitochondrion | 67.13 | 69.57 |
| Bra038466.1-P | Field mustard | cytosol, extracellular, peroxisome | 59.44 | 66.41 |
| HORVU6Hr1G013470.1 | Barley | peroxisome | 36.36 | 49.06 |
Protein Annotations
| EnsemblPlants:TraesCS6A01G076300.1 | EnsemblPlantsGene:TraesCS6A01G076300 | InterPro:NADH-UbQ_OxRdtase_su21_N | KEGG:00190+1.6.99.3+1.6.5.3 | PANTHER:PTHR34062 | PFAM:PF10785 |
| TMHMM:TMhelix | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr6A:+:46703018..46703532
Molecular Weight (calculated)
15952.4 Da
IEP (calculated)
9.909
GRAVY (calculated)
0.124
Length
143 amino acids
Sequence
(BLAST)
(BLAST)
001: MNTDITASVK PEYPVVDRNP PFTKVVGNFS TLDYLRLSTI SAVSVTVGYL SGIKPGIRGP SMVTGGLIGV LGGFMYAYQN SAGSLMGFFP NESEVARYKY
101: SCSSRRRHFS SLRYRKSVTV HLFFFLYLIS CELHLLWAMR DLG
101: SCSSRRRHFS SLRYRKSVTV HLFFFLYLIS CELHLLWAMR DLG
001: MNTDITALEK AQYPVVDRNP AFTKVVGNFS TLDYLRFSTI TGISVTVGYL SGIKPGIKGP SMVTGGLIGL MGGFMYAYQN SAGRLMGFFP NDGEVASYQK
101: RGGFSK
101: RGGFSK
Arabidopsis Description
At4g16450 [Source:UniProtKB/TrEMBL;Acc:Q84W12]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.